View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_high_4 (Length: 682)
Name: NF13231_high_4
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 23506064 - 23505722
Alignment:
| Q |
11 |
acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23506064 |
acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgaaaaaaatccaacaataacataattctttaacaaataatcttt |
23505965 |
T |
|
| Q |
111 |
taatcaacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccctaattcatcatcttccctctatcaacaacataaacaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
23505964 |
taatcaacaacaagacaattctttagcaaactcattcatcttcccaaatt-----------------catcatcttccctctatcaacaacacaaacaca |
23505882 |
T |
|
| Q |
211 |
tcttatnnnnnnnnnnnnnnn----tctggaaatgtaataacaacacaggaacaacaattcatcatcttccccttcaattgaaacccatttatctttaga |
306 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23505881 |
tcttataaaaaataaaaaataaaaatctggaaatgtaataacaacacaggaacaagaattcatcatcttccccttcaattgaaacccatttatctttaga |
23505782 |
T |
|
| Q |
307 |
ttcttcatatttcaacaataacagccagcaccaacaacacttccagcactccacaaccaa |
366 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23505781 |
ttcttcatatttcaacaataacagccagcaccaacaacacttccagcactccacaaccaa |
23505722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 526 - 666
Target Start/End: Complemental strand, 23505562 - 23505419
Alignment:
| Q |
526 |
agcaaacccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataagaataacccaaattcgaaaacccattttcaatttg |
625 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23505562 |
agcaaacccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataagaataacccaaattcgaaaacccatttccaatttg |
23505463 |
T |
|
| Q |
626 |
caac---ccagaaattcatatgaagaagaacggatctagaatgg |
666 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23505462 |
caaccggccagaaattcatatgaagaagaacggatctagaatgg |
23505419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 154
Target Start/End: Complemental strand, 2752722 - 2752579
Alignment:
| Q |
11 |
acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc |
110 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
2752722 |
acatcatcaacaaacctaaacattcaaatcttcatggcataatccaaaacattcatgaaaaaaatccaacaataacacaattctttaacatataatcttc |
2752623 |
T |
|
| Q |
111 |
taatcaacaacaagacaattctttagcaaactcattcatcttcc |
154 |
Q |
| |
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||||||||||||| |||||| |||| |||| ||||||||||||| |
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| T |
2752622 |
taatcaacaacaacacaattatttaacaaagtcattcatcttcc |
2752579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 44355075 - 44354937
Alignment:
| Q |
11 |
acatcatcaacaaactcaaacattcaaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttc |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| | |||||||| |
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| T |
44355075 |
acatcatcaacaaacctaaacattcaaaccttcatggcataatccaaaacattcatgaaaaaa-tccaacaataacacaattctttaacta-taatcttc |
44354978 |
T |
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| Q |
111 |
taatcaacaacaagacaattctttagcaaactcattcatct |
151 |
Q |
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||||||||||||| |||||| |||| |||| |||||||||| |
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| T |
44354977 |
taatcaacaacaacacaattatttaacaaagtcattcatct |
44354937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 35 - 332
Target Start/End: Original strand, 52094902 - 52095170
Alignment:
| Q |
35 |
caaaccttcatggcataatccaaaaaattcatgnnnnnnntccaacaataacataattctttaacaaataatcttctaatcaacaacaagacaattcttt |
134 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | ||||| || |||||| |
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| T |
52094902 |
caaacattcatggcataatccaaaaaattcatgaaaaaa-tccaacaataacacaattctttaacaaataatcttctaataagcaaca---catttcttt |
52094997 |
T |
|
| Q |
135 |
agcaaactcattcatcttcccaaattcatcatcttccctaattcatcatcttccctctatcaacaacataaacacatcttatnnnnnnnnnnnnnnntct |
234 |
Q |
| |
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| T |
52094998 |
aacaaactcatttatctttccaaa-----------------ttcatcatcttccctctatcaacaacacaaacacatctta-aaaaataaaaaaaaatct |
52095079 |
T |
|
| Q |
235 |
ggaaatgtaataacaacacaggaacaacaattcatcatcttccccttcaattgaaacccatttatctttagattcttcatatttcaacaataacagcc |
332 |
Q |
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||||| | |||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52095080 |
ggaaacgcaataacaaaa-------aacagttcatcatcttccccttcaattaaaacccatttatctttagattcttcatattccaacaataacagcc |
52095170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 37182981 - 37182925
Alignment:
| Q |
115 |
caacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttcc |
171 |
Q |
| |
|
||||||||| ||||| ||||| |||| ||||||||||| ||||||||||||||||| |
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| T |
37182981 |
caacaacaacacaatcctttaacaaagtcattcatcttttcaaattcatcatcttcc |
37182925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 37182939 - 37182901
Alignment:
| Q |
174 |
aattcatcatcttccctctatcaacaacataaacacatc |
212 |
Q |
| |
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||||||||||||||| ||||||||||||| ||||||||| |
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| T |
37182939 |
aattcatcatcttccttctatcaacaacacaaacacatc |
37182901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 590
Target Start/End: Original strand, 52095186 - 52095243
Alignment:
| Q |
533 |
ccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataa |
590 |
Q |
| |
|
|||||||||||| ||||| |||||| |||||||| ||| |||||||||||| ||||| |
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| T |
52095186 |
ccctcaaatccccaagccccaaattcaaaaacccattttcagatcaacaaaaacataa |
52095243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 7538714 - 7538792
Alignment:
| Q |
94 |
tttaacaaataatcttctaatcaacaacaagacaattctttagcaaactcattcatcttcccaaattcatcatcttccct |
173 |
Q |
| |
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||||||||| |||||||||||||||||||| ||| ||||||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
7538714 |
tttaacaaagaatcttctaatcaacaacaacaca-ttctttaacaaactcgttcttcttcccaaattcatcatcttccct |
7538792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 7538768 - 7538811
Alignment:
| Q |
166 |
tcttccctaattcatcatcttccctctatcaacaacataaacac |
209 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
7538768 |
tcttcccaaattcatcatcttccctctatcaacaacacaaacac |
7538811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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