View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_high_7 (Length: 605)
Name: NF13231_high_7
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 32158471 - 32157881
Alignment:
| Q |
1 |
tatttcttacaaaattatgattcttgtttggttttcattcaaaccataataatgatttagaagaatttgatatacatgaatctagtttagatagatttaa |
100 |
Q |
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| T |
32158471 |
tatttcttacaaaattatgattcttgtttgattttcattcaaaccataataatgatttagaagaatttgatatacatgaatctagtttagatagatttaa |
32158372 |
T |
|
| Q |
101 |
ttgtattaatgatttaggtgatgaattttgggtctgttaagaatgtgacttataccccactgggacataatattttgccaaaaacgattggtcttattgg |
200 |
Q |
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| T |
32158371 |
ttgtattaatgatttaggtgacgaattttggttctgttaagaatgtgacttataccccaccgggacataatattttaccaaaaacgattgttcttattgg |
32158272 |
T |
|
| Q |
201 |
taagattattgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacctgtgagggcattggttcgaaatagttgatccgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
32158271 |
taagattattgtcgaccatggttgatccagttggtaagatatgacacatggcttcaaaatatttacatgtgagggcattggttcgaaatagttgatccag |
32158172 |
T |
|
| Q |
301 |
ttggtaagatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagattctttgagattcaactcacctaaacttttaaatat |
400 |
Q |
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| T |
32158171 |
ttggtaagatatgatacatatgtaattactctttagtccatgatgtctatccagaacatggagactctttgagatccaactcacctaaacttttatatat |
32158072 |
T |
|
| Q |
401 |
ataatgaaattactgcaaggttgcatctatgccgagagaccacttgaatgcaattctatgatattattttgttcatgtcaaatatttgttagaaactagt |
500 |
Q |
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| T |
32158071 |
atgatgaaattactgcaaggttgcatctatgccgagagaccacttgaatgtaattgtatgatattattttgttcatgtcaaatatttgttagaaactagt |
32157972 |
T |
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| Q |
501 |
tataataataacattattttaaactaatgtttgtgataatttttctacagatgacactttcaggactattgaatgcgacagatggtctctg |
591 |
Q |
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| T |
32157971 |
tataataataacataattttaaactaatgtttgtgataatttttctacagatgacactttcgggactattgaatgcgacagatggtctctg |
32157881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 2821004 - 2821158
Alignment:
| Q |
51 |
aatgatttagaagaatttgatatacatgaatctagtttagatagatttaattgtattaatgatttaggtgatgaattttgggtc---tgttaagaatgtg |
147 |
Q |
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| T |
2821004 |
aatgatttagaataatttgatatacatgaatctagtttagatatatataattgtatggatgatttagctgacgaattttggttctgttgttaagaatgag |
2821103 |
T |
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| Q |
148 |
acttataccc--cactgggacataatattttgccaaaaacgattggtcttattgg |
200 |
Q |
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| T |
2821104 |
acttataccccacacgggggcataatattttgccaaaaacgattggtcttattgg |
2821158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 476 - 576
Target Start/End: Complemental strand, 32110703 - 32110602
Alignment:
| Q |
476 |
tgtcaaatatttgttagaaactagttataataataacattattttaaactaatgtttgt-gataatttttctacagatgacactttcaggactattgaat |
574 |
Q |
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|||||| ||||| | ||||| |||||||||| || |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||| |
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| T |
32110703 |
tgtcaactatttttcagaaaatagttataatgatgacattattttaaactaatgtttgttgatactttttcaacagatgacactttcaggactattgaat |
32110604 |
T |
|
| Q |
575 |
gc |
576 |
Q |
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|| |
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| T |
32110603 |
gc |
32110602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 523 - 576
Target Start/End: Original strand, 32211879 - 32211933
Alignment:
| Q |
523 |
actaatgtttgt-gataatttttctacagatgacactttcaggactattgaatgc |
576 |
Q |
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|||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |
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| T |
32211879 |
actaatgtttgttggtaatttttctacagatgacactttcgggactattgaatgc |
32211933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 547 - 588
Target Start/End: Complemental strand, 32182677 - 32182636
Alignment:
| Q |
547 |
acagatgacactttcaggactattgaatgcgacagatggtct |
588 |
Q |
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| T |
32182677 |
acaggtgacactttcaggactattgaatgcgacagatggtct |
32182636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 32111039 - 32110990
Alignment:
| Q |
51 |
aatgatttagaagaatttgatatacatgaatctagtttagatagatttaat |
101 |
Q |
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| T |
32111039 |
aatgatttggaagaatttgacatacatgaatctag-ttagatatatttaat |
32110990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 536 - 576
Target Start/End: Complemental strand, 32156826 - 32156786
Alignment:
| Q |
536 |
ataatttttctacagatgacactttcaggactattgaatgc |
576 |
Q |
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||||||| || |||| ||||||||||||||||||||||||| |
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| T |
32156826 |
ataatttgtcaacaggtgacactttcaggactattgaatgc |
32156786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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