View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_10 (Length: 467)
Name: NF13231_low_10
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 39815098 - 39814637
Alignment:
| Q |
1 |
tatgcatgattagtcatcaatccaattgtgccccggtcaagtcattatttctatattaagctttctatattaagctaaactttggctggtccacatatga |
100 |
Q |
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| T |
39815098 |
tatgcatgattggtcatcaatccaattgtgccccggtcaagtcattatttctatattaagctttctatattaagctaaactttggctggtccacatatga |
39814999 |
T |
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| Q |
101 |
agaagcttcttgttacagttactaacaaca---tctacacaatggagaagatcaacagcaatgatcaagaagattcaaaacttgtggttctcatcacagg |
197 |
Q |
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| T |
39814998 |
agaagcttcttgttacagttactaacaacaacatctacacaatggagaagatcaacagcaatgatcaagaagattcaaaacctgtggttctcatcacagg |
39814899 |
T |
|
| Q |
198 |
ttgcagcggaggaggaataggtaacgcgcttgcacgctccttcgcagccaacagctgcaatgtggttgcaaccagcaggtcatgttctaccatggcggat |
297 |
Q |
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| T |
39814898 |
ttgcagcggaggaggaataggtaacgcgcttgcacgctccttcgcagccaacagctgcaatgtggttgcaaccagcaggtcacgttctaccatggcggat |
39814799 |
T |
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| Q |
298 |
ttggatcaagaccctaaattcttccttcaagaactcgatgttcagtccgatgaaagcgtgaacagagttgtgaatattgttttggataaatttggtcgca |
397 |
Q |
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| T |
39814798 |
ttggatcaagaccctaaattcttccttcaagaactcgatgttcagtccgatgaaagcgtgaacagagttgtgaatactgttttggataaatttggtcgca |
39814699 |
T |
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| Q |
398 |
tcgatgttcttgttaataacgctggtgttccttgtacgggcccacttgctgaggttcatctc |
459 |
Q |
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| T |
39814698 |
tcgatgttcttgttaataacgctggtgttccttgtacaggcccacttgctgaggttcctctc |
39814637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 132 - 449
Target Start/End: Complemental strand, 39818488 - 39818171
Alignment:
| Q |
132 |
ctacacaatggagaagatcaacagcaatgatcaagaagattcaaaacttgtggttctcatcacaggttgcagcggaggaggaataggtaacgcgcttgca |
231 |
Q |
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| T |
39818488 |
ctacacaatggagaagatcaacagcaatgatcacgaagattcgaaaccggtggttctcatcacaggttgcactggaggaggtataggtaacgcgcttgca |
39818389 |
T |
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| Q |
232 |
cgctccttcgcagccaacagctgcaatgtggttgcaaccagcaggtcatgttctaccatggcggatttggatcaagaccctaaattcttccttcaagaac |
331 |
Q |
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| T |
39818388 |
cgctcctttgcagccaacagctgcagagttgttgcaaccagcaggtcacgttcaaccatggcggatttggatcaagaccctaaattcttccttcaagaac |
39818289 |
T |
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| Q |
332 |
tcgatgttcagtccgatgaaagcgtgaacagagttgtgaatattgttttggataaatttggtcgcatcgatgttcttgttaataacgctggtgttccttg |
431 |
Q |
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| T |
39818288 |
tcgatgttcagtctgatgaaagcgtgaacagagttgtgaataatgttctggataaatttggtcgtatcgatgttcttgttaataacgctggtgttccttg |
39818189 |
T |
|
| Q |
432 |
tacgggcccacttgctga |
449 |
Q |
| |
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| T |
39818188 |
tgtgggcccacttgctga |
39818171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39812693 - 39812634
Alignment:
| Q |
1 |
tatgcatgattagtcatcaatccaattgtgccccggtcaagtcattatttctatattaag |
60 |
Q |
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||||||| ||| ||||||||| |||||||| ||| |||||||||||||||||| |||||| |
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| T |
39812693 |
tatgcattattggtcatcaattcaattgtgtcccagtcaagtcattatttctacattaag |
39812634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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