View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13231_low_11 (Length: 423)

Name: NF13231_low_11
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13231_low_11
NF13231_low_11
[»] chr6 (1 HSPs)
chr6 (9-404)||(5951617-5952012)
[»] chr5 (2 HSPs)
chr5 (172-371)||(31952004-31952203)
chr5 (9-80)||(31951754-31951825)
[»] chr3 (3 HSPs)
chr3 (168-326)||(28188292-28188450)
chr3 (168-367)||(18077779-18077978)
chr3 (231-326)||(28153709-28153806)
[»] chr4 (1 HSPs)
chr4 (176-314)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (18-72)||(27092402-27092456)
chr7 (18-72)||(27185845-27185899)
chr7 (255-310)||(27092762-27092817)
chr7 (255-310)||(27185484-27185539)
[»] scaffold1163 (2 HSPs)
scaffold1163 (339-404)||(2468-2533)
scaffold1163 (17-53)||(2254-2290)
[»] chr2 (3 HSPs)
chr2 (356-404)||(22397077-22397125)
chr2 (237-278)||(22396983-22397024)
chr2 (17-53)||(22396846-22396882)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 9 - 404
Target Start/End: Original strand, 5951617 - 5952012
Alignment:
Q  9 acatcatcaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacgcagaattattaga 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5951617 acatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagtattaacacagaattattaga 5951716  T
Q  109 gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactgtgtgccggctgcgaaccac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5951717 gcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactgtgtgccggctgcgaaccac 5951816  T
Q  209 gaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggagg 308  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951817 gaagaatcgctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggagg 5951916  T
Q  309 atcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951917 atcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 5952012  T

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Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 172 - 371
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
Q  172 taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata 271  Q
    ||||||||||||||||| || || |  || |||||  | ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  31952004 taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata 31952103  T
Q  272 tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg 371  Q
    ||||||| || || ||||| ||||| ||||| || ||||||||  |||||| |||||| ||||| ||||| ||||||||  |||||||||||||||||||    
T  31952104 tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg 31952203  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 31951754 - 31951825
Alignment:
Q  9 acatcatcaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa 80  Q
    |||||| ||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||  |||||||    
T  31951754 acatcagcaagttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa 31951825  T

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Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 28188450 - 28188292
Alignment:
Q  168 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 267  Q
    ||||||||||| |||||||||||| |  || |||||| ||||||||||||||| |||||| | ||||||||||||   |||||||||||| |||||||||    
T  28188450 aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgaca 28188351  T
Q  268 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 326  Q
    | ||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||    
T  28188350 agtatgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata 28188292  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 367
Target Start/End: Original strand, 18077779 - 18077978
Alignment:
Q  168 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 267  Q
    |||| |||||||||||||||||||||| ||||  |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | |||||||||    
T  18077779 aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgaca 18077878  T
Q  268 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg 367  Q
    ||||   |||| |  |||||||  |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| ||  |||||||||||||||    
T  18077879 aatactatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg 18077978  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 326
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
Q  231 gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 326  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||  |||| ||||||||||| |||||| |||| ||| ||||||| |||||||||||    
T  28153806 gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata 28153709  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
Q  176 tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt 275  Q
    ||||||| |||||||||||  | || || ||||||||||| ||||| || ||||  |||||||| || || |  || | ||| ||||||||||| |||||    
T  9908003 tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt 9907904  T
Q  276 atcgcacttgaggtctctatgaattaccggaggatcatg 314  Q
    ||| ||||| ||||||||||| || || |||||||||||    
T  9907903 atcacactttaggtctctatgtatcacaggaggatcatg 9907865  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
Q  18 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 72  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27092402 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27092456  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
Q  18 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 72  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27185899 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27185845  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
Q  255 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 310  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27092762 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27092817  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 310
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
Q  255 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 310  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27185539 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27185484  T

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Target: scaffold1163 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 404
Target Start/End: Original strand, 2468 - 2533
Alignment:
Q  339 taagatttggcgaacccaactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 404  Q
    |||||||||||||  | || |||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  2468 taagatttggcgaggctaattctttattgcttacatgcctatatgattatatttcttcctgtatct 2533  T

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Target: scaffold1163; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 2254 - 2290
Alignment:
Q  17 aagttcattgtattcttcttcgtacaactctggtgcc 53  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2254 aagttcattgtattcttcttcgtacaattctggtgcc 2290  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 22397077 - 22397125
Alignment:
Q  356 aactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 404  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  22397077 aactctttattgcttacatgcctatatgattatatttcttcctgtatct 22397125  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
Q  237 aattttcacttgtccaagatggccattgacaaatatgttatc 278  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  22396983 aattttcacgtgtccaagatgtccattgacaaatgtgttatc 22397024  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 22396846 - 22396882
Alignment:
Q  17 aagttcattgtattcttcttcgtacaactctggtgcc 53  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  22396846 aagttcattttattcttcttcgtacaattctggtgcc 22396882  T

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