View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_12 (Length: 409)
Name: NF13231_low_12
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 38226814 - 38226437
Alignment:
| Q |
19 |
aaatcatcggttgatgatggatcaagatcaaaaagttcacataatatttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226814 |
aaatcatcggttgatgatggatcaagatcaaaaagttcacagaatatttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacc |
38226715 |
T |
|
| Q |
119 |
cttcaatcttgatccaacagtcattaatgtgcttattgcgtgtatgtaaagtctgtcgactgcagagaatccttacttgtagtttttgtcaactcaattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226714 |
cttcaatcttgatccaacagtcattaatgtgcttattgcgtgtatgtaaagtctgtagactgcagagaatccttacttgtagtttttgtcaactcaattt |
38226615 |
T |
|
| Q |
219 |
aactctaaaacataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226614 |
aactctaaaacataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggca |
38226515 |
T |
|
| Q |
319 |
cagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226514 |
cagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatct |
38226437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 211 - 391
Target Start/End: Complemental strand, 38214242 - 38214063
Alignment:
| Q |
211 |
ctcaatttaactctaaaacataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatc |
310 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
38214242 |
ctcaatttaactctaaaacacaaaactagtccattactttgttgggtgtttagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatc |
38214144 |
T |
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| Q |
311 |
ttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgt |
391 |
Q |
| |
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||| |||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38214143 |
ttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgt |
38214063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 252 - 409
Target Start/End: Complemental strand, 38238120 - 38237963
Alignment:
| Q |
252 |
ttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatg |
351 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||| |||||| ||| |
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| T |
38238120 |
ttgggtatatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatg |
38238021 |
T |
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| Q |
352 |
tgaagaggacaagtctcccactacaaactggtggctatgtgatctgtgctgctcctca |
409 |
Q |
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|||||||||||||||||||| | ||||||||||||||| |||||| || |||| |||| |
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| T |
38238020 |
tgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctca |
38237963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 38243099 - 38242951
Alignment:
| Q |
249 |
ttgttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgtt |
347 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| |
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| T |
38243099 |
ttgttgggtatcatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgtt |
38243000 |
T |
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| Q |
348 |
gatgtgaagaggacaagtctcccactacaaactggtggctatgtgatct |
396 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||| |||||||||| |
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| T |
38242999 |
catgtgaagaggacaagtctcccatttcaaactggtggatatgtgatct |
38242951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 230 - 396
Target Start/End: Complemental strand, 38253470 - 38253304
Alignment:
| Q |
230 |
ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa |
329 |
Q |
| |
|
|||| |||||||||||| |||||||||||| | ||||||||| |||| |||||||||| ||||||| ||||| |||||||| ||| ||| || || |
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| T |
38253470 |
ataacactagtccattaagttgttgggtataatgcgagcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaag |
38253371 |
T |
|
| Q |
330 |
gaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatct |
396 |
Q |
| |
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|| ||||||| |||||| |||| || ||||||||||||||||||||||| |||||||||||||||| |
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| T |
38253370 |
gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatct |
38253304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 266 - 396
Target Start/End: Complemental strand, 38220226 - 38220096
Alignment:
| Q |
266 |
agcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagt |
365 |
Q |
| |
|
||||| ||| |||| |||||||||| |||||||||||||||||| ||| |||| ||||||| || |||||||||||||| |||||||||||| |||| |
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| T |
38220226 |
agcaatatggatttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagt |
38220127 |
T |
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| Q |
366 |
ctcccactacaaactggtggctatgtgatct |
396 |
Q |
| |
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|||||| | ||||||||||| |||||||||| |
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| T |
38220126 |
ctcccatttcaaactggtggttatgtgatct |
38220096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 230 - 382
Target Start/End: Complemental strand, 38248316 - 38248165
Alignment:
| Q |
230 |
ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa |
329 |
Q |
| |
|
|||| ||||||||| || |||||| ||||||| | ||||||| | |||| |||||||||| ||||||||| |||||||||||| ||||||| || | |
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| T |
38248316 |
ataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaatag |
38248218 |
T |
|
| Q |
330 |
gaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactgg |
382 |
Q |
| |
|
|| ||||||| |||||| ||||||| ||||||||||||||||||||| |||| |
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| T |
38248217 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
38248165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 225 - 402
Target Start/End: Complemental strand, 17454708 - 17454527
Alignment:
| Q |
225 |
aaaacataaaactagtccattactttgttgggtata----tagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcaca |
320 |
Q |
| |
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||||||||| | ||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
17454708 |
aaaacataacaacagttcatttctttgttgggtataattatagtgagcaacatgaatttctttgtttcagattgagtatcaagttgaatcttgcagcaca |
17454609 |
T |
|
| Q |
321 |
gaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctgtgctg |
402 |
Q |
| |
|
|||||| | || |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
17454608 |
gaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctg |
17454527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 251 - 402
Target Start/End: Complemental strand, 17433600 - 17433448
Alignment:
| Q |
251 |
gttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttga |
349 |
Q |
| |
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||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| ||||||| | || ||||||||||||| | |
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| T |
17433600 |
gttgggtattatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttca |
17433501 |
T |
|
| Q |
350 |
tgtgaagaggacaagtctcccactacaaactggtggctatgtgatctgtgctg |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
17433500 |
tgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctg |
17433448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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