View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_14 (Length: 361)
Name: NF13231_low_14
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_14 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 6649760 - 6649400
Alignment:
| Q |
1 |
tttgtgtggttgagttagatctacgagactaaaaccaaattctgagttagaaaaagacacaatttttagcatacatgaacctactatgattggttgtaag |
100 |
Q |
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| T |
6649760 |
tttgtgtggttgagttagatctacgagactaaaaccaaattctgagttagaaaaagacacaatttttagcatacatgaacctactatgattggttgtaag |
6649661 |
T |
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| Q |
101 |
atccattagttcttagttatattagaaaaaggaatgtggattcaaatcatgttgatctgagtttttgtttcatgttacattattgtaccttcacagttat |
200 |
Q |
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| T |
6649660 |
atccattagttcttagttatattagaaaaaggaatgtggattcaaatcatgttgatctgagcttttgtttcatgttacattattgtaccttcacagttat |
6649561 |
T |
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| Q |
201 |
caatcagcataataaatttcatgtttggctagtttcatgcttttgttgtagtaaatttacnnnnnnncttgatctatttctgtcatgaattaattttaca |
300 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
6649560 |
caatcatcataataaatttcatgtttggctaatttcatgcttttgttgtagtaaatttactttttttcttgatctatttctgtcatgaattgattttaca |
6649461 |
T |
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| Q |
301 |
aattgtcaatcataattatgggatatctcatagttcttcatcaaatttggggttagtccta |
361 |
Q |
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|||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6649460 |
aattatcaagcataattatgggatatctcataattcttcatcaaatttggggttagtccta |
6649400 |
T |
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