View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_18 (Length: 309)
Name: NF13231_low_18
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 34760129 - 34759833
Alignment:
| Q |
1 |
atattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcatccagttccgttgatgcgattggtagacgtaagcataagctt |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34760129 |
atattgacctttacaatgtatctaattgctttcacaggaacttgcattaaaaatggcctccagttccgttgatgcgattggtagacgtaagcataagctt |
34760030 |
T |
|
| Q |
101 |
tccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcag |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||| |
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| T |
34760029 |
tcctagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgaccacatcattggctgcattctttcttttctttctactaagagtgcag |
34759930 |
T |
|
| Q |
201 |
tttctaccagtgttttatcaaagaggtggatatacctctggaaatttatcacccgactaaattttgacgacatcgaccatttttcaaacaagataag |
297 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||||||||| |
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| T |
34759929 |
tttctacttgtgttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggaccattcttcgaacaagataag |
34759833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 34747695 - 34747423
Alignment:
| Q |
1 |
atattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcatccagttccgttgatgcgattggtagacgtaagcataagctt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34747695 |
atattgagctttacaatgtatctaactgctttcacaggaacttgctgtaaaaatggtctccagttccgttgatgcgattggtagatgtaagcataagctt |
34747596 |
T |
|
| Q |
101 |
tccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcag |
200 |
Q |
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|| ||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |||||||| ||||| |
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| T |
34747595 |
tctaagaggcaaaaatccaacaagggacaagacttgataagcaacctacctgaccacattattggttgcgttctttcttttcttcctactaaggatgcag |
34747496 |
T |
|
| Q |
201 |
tttctaccagtgttttatcaaagaggtggatatacctctggaaatttatcacccgactaaattttgacgacat |
273 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| ||||||| ||||| |
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| T |
34747495 |
tttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttgatgacat |
34747423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 34756032 - 34755761
Alignment:
| Q |
1 |
atattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcatccagttccgttgatgcgattggtagacgtaagcataagctt |
100 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
34756032 |
atatagagctttaaaatgtatctaattgctttcgcaggaacttgctgtaaaaatgacctccatctccgttgatgcgattggtagacgtaagcataagctt |
34755933 |
T |
|
| Q |
101 |
tccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcag |
200 |
Q |
| |
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|| ||||||| ||| |||| ||||| |||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||| |||||||| |||| |
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| T |
34755932 |
tctaagaggcaaaattccatcaagggtcaagacttgataagcaacctacctgaccacattattggttacattcttttttttcttcctactaaggaagcag |
34755833 |
T |
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| Q |
201 |
tttctaccagtgttttatcaaagaggtggatatacctctggaaatttatcacccgactaaattttgacgaca |
272 |
Q |
| |
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|| ||| || ||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
34755832 |
ttcgtactagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgaca |
34755761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 34743131 - 34742853
Alignment:
| Q |
1 |
atattgagctttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcatccagttccgttgatgcgattggtagacgtaagcataagctt |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||| ||||||| | | ||||||||||||| ||||||| |
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| T |
34743131 |
atatagagctttacaatgtatctaattattttcataggaacttgctgcaaaaatggacaatagttctgttgatgagttgggtagacgtaagcgtaagctt |
34743032 |
T |
|
| Q |
101 |
tccaagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcag |
200 |
Q |
| |
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|| |||| || |||||||||||| | | |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||| ||| |
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| T |
34743031 |
tctaagatgcaaaaatccagcaaaggttaagacttgataagcaacctacctgaccacattattggttgcattctttcttttcttcatattaaggaagcaa |
34742932 |
T |
|
| Q |
201 |
tttctaccagtgttttatcaaagaggtggatatacctctggaaatttatcacccgactaaattttgacgacatcgacca |
279 |
Q |
| |
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||| |||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
34742931 |
tttgtaccagcgttttatcaaagaggtggatatccctctggaaaattatcacccgactaaattttgacgacatggacca |
34742853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 34752304 - 34752045
Alignment:
| Q |
11 |
ttacaatgtatctaattgctttcacaggaacttgctgtaaaaatggcatccagttccgttgatgcgattggtagacgtaagcataagctttccaagaggc |
110 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
34752304 |
ttacaatgtatttaattgctttcacaggaacttgctgtaaaaatggcctccagttccgttgatgcgattgatagacgtaagcataagctttcca------ |
34752211 |
T |
|
| Q |
111 |
gaaaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcagtttctaccag |
210 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||| |||||||||| | |||||||| ||||||| |||||||| |||||| |||||| |
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| T |
34752210 |
---------gcaagggtcaagacttgataagcaacctaccagaccacattattggttacattctttattttctttctactaaggaagcagttcgtaccag |
34752120 |
T |
|
| Q |
211 |
tgttttatcaaagaggtggatatacctctggaaatttatcacccgactaaattttgacgacatcgaccatttttc |
285 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| |
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| T |
34752119 |
cgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgacaagaaccatttttc |
34752045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 235
Target Start/End: Complemental strand, 51944813 - 51944691
Alignment:
| Q |
113 |
aaatccagcaaggatcaagacttgataagcaacctacctgacgacattattggctgcattctttcttttcttcttactaagggtgcagtttctaccagtg |
212 |
Q |
| |
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|||||||| ||| |||||| |||||||| ||||||||||| |||| || |||||||||||||||||| |||||| ||||||| |||| ||| |
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| T |
51944813 |
aaatccagtgagggtcaagatatgataagcgacctacctgactttgttatcggtcgcattctttcttttcttcctactaaatatgcagttcgtaccggtg |
51944714 |
T |
|
| Q |
213 |
ttttatcaaagaggtggatatac |
235 |
Q |
| |
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||||||| |||||||||||||| |
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|
| T |
51944713 |
ctttatcacagaggtggatatac |
51944691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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