View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_20 (Length: 302)
Name: NF13231_low_20
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 31058529 - 31058805
Alignment:
| Q |
10 |
catcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatg |
109 |
Q |
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| T |
31058529 |
catcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatg |
31058628 |
T |
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| Q |
110 |
aattttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaacacacataacccctgatttcagtttcac |
209 |
Q |
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| T |
31058629 |
aattttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgagtcattgtcaacacacataacccctgatttcagtttcac |
31058728 |
T |
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| Q |
210 |
aactagaaattaggaatatttttcatggaaataggtatatcagtgcttgaaaattgaatttgatgtataaacagtga |
286 |
Q |
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| T |
31058729 |
aactagaaattaggaatatttttcatggaaataggtatatcagtgcttgaaaattgaatttgatgtataaacagtga |
31058805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 31082422 - 31082591
Alignment:
| Q |
12 |
tcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatgaa |
111 |
Q |
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| T |
31082422 |
tcatcgaattgatcagctccaaagctttccaagcatggtttgtgtcctccagtgcccaaggagatacagtaaagggcaaggaagaaaacaacttcatgaa |
31082521 |
T |
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| Q |
112 |
ttttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaa |
181 |
Q |
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| T |
31082522 |
ttttccttggctgaagacatgtctttgtgttgcatgactttaaacttgggatgtattgagacattgtcaa |
31082591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 31065374 - 31065545
Alignment:
| Q |
12 |
tcatcaaattgatccgctccaaagctttgtaagcatggtctgtatcctccagttccgaaagatttacagtaaagcgcgagaaagaaaaccacttcatgaa |
111 |
Q |
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| T |
31065374 |
tcatcaaattgatcagctccaaagctttccaagcatggtttgtgtcctccagtgcccaaggagatacagtaaagggcaaggaagaaaactacttcatgaa |
31065473 |
T |
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| Q |
112 |
ttttcctaggccgatgacatttctctgtgtggcatgacttcaaacttgggatgtattgcgtcattgtcaaca |
183 |
Q |
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| T |
31065474 |
gttttcttggctgcagacatttctttgtgttgcatgtctttaaacttggtatgtattgagacatagtcaaca |
31065545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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