View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_21 (Length: 267)
Name: NF13231_low_21
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33062935 - 33063086
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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| T |
33062935 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtccagcatataa |
33063034 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33063035 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33063086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33065116 - 33065267
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33065116 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtccagcatataa |
33065215 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33065216 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33065267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33066190 - 33066341
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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| T |
33066190 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtccagcatataa |
33066289 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33066290 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33066341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33068328 - 33068479
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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| T |
33068328 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtccagcatataa |
33068427 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33068428 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33068479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33069414 - 33069565
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33069414 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggtccagcatataa |
33069513 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33069514 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33069565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33064030 - 33064181
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33064030 |
aacacggaacttccaactattaaacttataagtttcagcgcatgttttagataccgctgaaattccaataaacattgggccaccatggtccagcatataa |
33064129 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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| T |
33064130 |
gctcctaaatcaacagaatgattaagcactaatgatgggaacttgtagttgt |
33064181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 33067276 - 33067427
Alignment:
| Q |
101 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaatcccaataaacattgggccaccatggtccagcatataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
33067276 |
aacacggaacttccaactatcaaacttataagtttcagcgcatgttttagatactgctgaaattccaataaacattgggccaccatggttcagcatataa |
33067375 |
T |
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| Q |
201 |
gctcctaaatcaacagaatgattaaacactaatgatgggaacttgtagttgt |
252 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
33067376 |
gctcctaaatcaacagaatgattaagcactaatgatggaaacttgtagttgt |
33067427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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