View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_22 (Length: 262)
Name: NF13231_low_22
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 4296506 - 4296301
Alignment:
| Q |
18 |
gagagaagaatgatcatactgattattgaggacattttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattacact |
117 |
Q |
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| T |
4296506 |
gagagaagaatgatcatattgattattgaggacattttctataacaacactgctaaatagatgcatatacagtgaatgtagaggtttccagaattagact |
4296407 |
T |
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| Q |
118 |
tcttttgggtcaatcagaactaca-----cttaattaattatgggtactaataagcatgagccacaacatacacaaacatttagttcatagatatataga |
212 |
Q |
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| T |
4296406 |
tcttttgggtcaatcagaactacactcttcttaattaattatgggtactaataagcatgagccacaacatacacaaacatttagttcatagatatataga |
4296307 |
T |
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| Q |
213 |
gttaaa |
218 |
Q |
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|||||| |
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| T |
4296306 |
gttaaa |
4296301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 4296292 - 4296252
Alignment:
| Q |
212 |
agttaaagaaacacagagctggagctacattctgatctgtg |
252 |
Q |
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| T |
4296292 |
agttaaagaaacacagagctggagctacattctgatctgtg |
4296252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 4301904 - 4301865
Alignment:
| Q |
157 |
gtactaataagcatgagccacaacatacacaaacatttag |
196 |
Q |
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| T |
4301904 |
gtactaataagcatgagccacaacattcacaaatatttag |
4301865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 4303130 - 4303040
Alignment:
| Q |
72 |
aaatagatgcatatacagtgaatgtagaggtttccagaattacacttcttttg-ggtcaatcagaactacacttaattaattatgggtactaata |
165 |
Q |
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| T |
4303130 |
aaatagacgcatatatagtgaatgtaa--gtaaccaaaattacaattcttttgaggtaaatcagaactacactc--ttaattatgggtactaata |
4303040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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