View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_24 (Length: 237)
Name: NF13231_low_24
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 3372557 - 3372759
Alignment:
| Q |
17 |
agaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgaca |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3372557 |
agaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgaca |
3372656 |
T |
|
| Q |
117 |
tgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccat |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3372657 |
tgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccat |
3372756 |
T |
|
| Q |
217 |
agc |
219 |
Q |
| |
|
||| |
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|
| T |
3372757 |
agc |
3372759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 3361801 - 3362008
Alignment:
| Q |
12 |
cagagagaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaagga |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3361801 |
cagacagaagagagtagcttgcaagcaatcgaaacatgcgatcaagcctattcggtaaatcagaatgctgtgttggtagctttgaagcaatttcaaagga |
3361900 |
T |
|
| Q |
112 |
tgacatgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagt |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3361901 |
tgacatgaatccaccattactttccttagcaatgatatcaaataaatggagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagt |
3362000 |
T |
|
| Q |
212 |
accatagc |
219 |
Q |
| |
|
|||||||| |
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|
| T |
3362001 |
accatagc |
3362008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 3299452 - 3299651
Alignment:
| Q |
17 |
agaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgaca |
116 |
Q |
| |
|
|||||||||||||| || |||| || ||||| ||||| | |||||| || || ||||| ||||| ||||||| |||||||||||||||||||| ||||| |
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|
| T |
3299452 |
agaagagagtagctagctagcatgcgcaacatacgatctaacctatttggcaagtcagagtgttgagttggtaactttgaagcaatttcaaaggctgaca |
3299551 |
T |
|
| Q |
117 |
tgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccat |
216 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||| |
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|
| T |
3299552 |
tgaaatcaccattactttccttagcaatgatttcaaacaagttgagttcaattgcggcgttaagaactgcaggaaacaccatattggcacctagcaccat |
3299651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 3350432 - 3350539
Alignment:
| Q |
17 |
agaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgaca |
116 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || ||||||| ||| || |||||||| ||||| ||||||| |||||||||||||||| || |||| |
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|
| T |
3350432 |
agaagagagtagcttgcaagcaagcgtaacatacggtcgagccgatttggcaaatcagagtgttgagttggtaagtttgaagcaatttcaatggctgact |
3350531 |
T |
|
| Q |
117 |
tgaatcca |
124 |
Q |
| |
|
|||||||| |
|
|
| T |
3350532 |
tgaatcca |
3350539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 3390830 - 3390899
Alignment:
| Q |
132 |
tttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatt |
201 |
Q |
| |
|
|||| ||||| ||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |
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|
| T |
3390830 |
tttccttagcaatgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatatt |
3390899 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 3405187 - 3405251
Alignment:
| Q |
143 |
atgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcacc |
207 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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|
| T |
3405187 |
atgatatcaaacaagttgagttcaattgcagctttaaaaactgcaggaaacaccatattggcacc |
3405251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 3350546 - 3350624
Alignment:
| Q |
143 |
atgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccatatttgcaccaagtaccatagctg |
221 |
Q |
| |
|
||||| ||||| || ||||||| ||||||||| ||||||||||| |||||||||| ||| | ||| |||||||| |||| |
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|
| T |
3350546 |
atgatttcaaacaagttgagttgaattgcagcattaagaactgctggaaacaccaaattggaacctagtaccatggctg |
3350624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 20721126 - 20721275
Alignment:
| Q |
44 |
aacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaaggatgacatgaatccaccattactttcattagcta |
143 |
Q |
| |
|
||||| || ||||| ||||| |||||||| || ||||| ||||||| |||| |||||||||| ||| ||||| |||||||||||||| ||| | |
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|
| T |
20721126 |
aacatacggtcgagtctatttggtaaatcggagtgttgagttggtaactttaaagcaatttcgtaggccgacataaatccaccattact------agcaa |
20721219 |
T |
|
| Q |
144 |
tgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaaacaccata |
199 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
20721220 |
tgatatcaaataatttgagctcaattgcagcattaagaattgcaggaaaaaccata |
20721275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 23993090 - 23992914
Alignment:
| Q |
12 |
cagagagaagagagtagcttgcaagcaatcgaaacatgcgatcgagcctattcggtaaatcagaatgttgtgttggtagctttgaagcaatttcaaagga |
111 |
Q |
| |
|
|||| |||||||||||||| ||||||| | || | |||||||| ||||| ||||| || || ||||| |||||| |||||||||||||||||| |
|
|
| T |
23993090 |
cagaaagaagagagtagctagcaagcacgcacaaaacacgatcgagtctatttggtaagtcggagtgttgatttggtaagtttgaagcaatttcaaagac |
23992991 |
T |
|
| Q |
112 |
tgacatgaatccaccattactttcattagctatgatgtcaaataaattgagttcaattgcagcgttaagaactgcaggaa |
191 |
Q |
| |
|
||||| |||||| |||| || |||| ||||| |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
23992990 |
agacataaatccatcattgctgg---tagcaatgatatcaaataatttgagttcaattgcagcattaagaactgcaggaa |
23992914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 43364404 - 43364367
Alignment:
| Q |
137 |
ttagctatgatgtcaaataaattgagttcaattgcagc |
174 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
43364404 |
ttagctatgatctcaaataaattgagttcaatagcagc |
43364367 |
T |
|
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