View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13231_low_27 (Length: 216)
Name: NF13231_low_27
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 32158457 - 32158654
Alignment:
| Q |
1 |
attttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32158457 |
attttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtatccattatcaacaatttcttcatcttcttctcggtt |
32158556 |
T |
|
| Q |
101 |
ttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtacat |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32158557 |
ttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtacat |
32158654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 32111059 - 32111234
Alignment:
| Q |
15 |
aaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacgg |
114 |
Q |
| |
|
|||||| || |||||||| | ||||| |||||||| ||||| ||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32111059 |
aaaatcaaagatgaatcacattttcaaagagaaattcatacattattgtggccattatgaacaacttcttcatcttcttctcggttttgcaattttacgg |
32111158 |
T |
|
| Q |
115 |
tgcaatcaatatcctctatcacaagtatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
32111159 |
agcaatcaatatcctctatcacaagtatagaacggttggacatgctgagaataagttgcttcaagctcttattatc |
32111234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 46 - 198
Target Start/End: Original strand, 32174761 - 32174913
Alignment:
| Q |
46 |
aaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtataga |
145 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| | |||| ||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32174761 |
aaatatataccttattgtatccattatcaaccacgtctttatcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcactagtataga |
32174860 |
T |
|
| Q |
146 |
acgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtacat |
198 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32174861 |
acgcttgggaatgtcaagaataagttgcttcaagcgcttattatcttgtacat |
32174913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 32206067 - 32205913
Alignment:
| Q |
42 |
agagaaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagta |
141 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| | |||| ||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
32206067 |
agagatatacataccttattgtatccattatcaaccacgtctttatcttcttctcggttttgcaaatttatagtgcaatcgatatcctctatcacaagta |
32205968 |
T |
|
| Q |
142 |
tagaacgattggacatgtcaagaataagttgcttcaagcgcttattatcttgtac |
196 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
32205967 |
tagaacggttggacataccaagaataagctgcttcaagatcttattatcttgtac |
32205913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 190
Target Start/End: Original strand, 32119115 - 32119256
Alignment:
| Q |
43 |
gagaaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtat |
142 |
Q |
| |
|
||||||| ||||||||||||| |||||| || ||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
32119115 |
gagaaatgcataccttattgtctccatt------aacttctttctcttcttctcggttctgcaaatttatattgcaatcaatatcctctatcacaagtat |
32119208 |
T |
|
| Q |
143 |
agaacgattggacatgtcaagaataagttgcttcaagcgcttattatc |
190 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32119209 |
agaacgattgggaatgtcaagaataagttgcttcaagctcttattatc |
32119256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 32182800 - 32182944
Alignment:
| Q |
46 |
aaatacataccttattgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtataga |
145 |
Q |
| |
|
||||| |||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32182800 |
aaatatataccttattgtctccattattaacaacttctttctcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatagc |
32182899 |
T |
|
| Q |
146 |
acgattggacatgtcaagaataagttgcttcaagcgcttattatc |
190 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
32182900 |
acggttggacatgctgagaataagttgcttcaaggtcttattatc |
32182944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 32211790 - 32211640
Alignment:
| Q |
46 |
aaatacataccttattgtatccattctcaacaatttcttcat------cttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaag |
139 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||| || | ||||||||||| |||||||||||||| |
|
|
| T |
32211790 |
aaatacataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaag |
32211691 |
T |
|
| Q |
140 |
tatagaacgattggacatgtcaagaataagttgcttcaagcgcttattatc |
190 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
32211690 |
tatagaacggttggacataccaatgataagttgcttcaagctcttattatc |
32211640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 51 - 189
Target Start/End: Original strand, 32534304 - 32534448
Alignment:
| Q |
51 |
cataccttattgtatccattctcaacaatttcttcat------cttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtatag |
144 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||| || | ||||||||||| ||||||||||||||||||| |
|
|
| T |
32534304 |
cataccttattgtatccattatcaacaacttcttcattttcatcttcttctcggttctgcaggttaatagtgcaatcaatgtcctctatcacaagtatag |
32534403 |
T |
|
| Q |
145 |
aacgattggacatgtcaagaataagttgcttcaagcgcttattat |
189 |
Q |
| |
|
|||| ||||||||| |||||||||||| | || ||| |||||||| |
|
|
| T |
32534404 |
aacggttggacatgccaagaataagtttcctcgagctcttattat |
32534448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 32157097 - 32157228
Alignment:
| Q |
59 |
attgtatccattctcaacaatttcttcatcttcttctcggttttgcaattttacggtgcaatcaatatcctctatcacaagtatagaacgattggacatg |
158 |
Q |
| |
|
||||| |||||| |||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
32157097 |
attgtctccattatcaacagcttctttctcttcttctcggttctgcaaatttatagtgcaatcaatatcctctatcacaagtatcgcacggttggacatg |
32157196 |
T |
|
| Q |
159 |
tcaagaataagttgcttcaagcgcttattatc |
190 |
Q |
| |
|
||||| ||||||||||||| ||||||||| |
|
|
| T |
32157197 |
ctgagaattagttgcttcaagctcttattatc |
32157228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 2820944 - 2820880
Alignment:
| Q |
1 |
attttgtaagaaataaaatcgaacatgaatcatagtttcatagagaaatacataccttattgtat |
65 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2820944 |
attttgtaagagagaaaatcaaacatgaatcatagtttcatagagaaatacataccttattgtat |
2820880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University