View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13231_low_3 (Length: 743)

Name: NF13231_low_3
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13231_low_3
NF13231_low_3
[»] chr6 (1 HSPs)
chr6 (10-724)||(5951298-5952012)
[»] chr5 (2 HSPs)
chr5 (225-400)||(31951650-31951825)
chr5 (492-691)||(31952004-31952203)
[»] chr3 (7 HSPs)
chr3 (488-646)||(28188292-28188450)
chr3 (488-687)||(18077779-18077978)
chr3 (241-371)||(28188578-28188708)
chr3 (75-159)||(28153837-28153921)
chr3 (551-646)||(28153709-28153806)
chr3 (299-392)||(36630146-36630239)
chr3 (210-308)||(28507736-28507834)
[»] chr2 (4 HSPs)
chr2 (17-159)||(22396537-22396679)
chr2 (213-277)||(22396747-22396811)
chr2 (676-724)||(22397077-22397125)
chr2 (557-598)||(22396983-22397024)
[»] chr4 (1 HSPs)
chr4 (496-634)||(9907865-9908003)
[»] chr7 (4 HSPs)
chr7 (338-392)||(27092402-27092456)
chr7 (338-392)||(27185845-27185899)
chr7 (575-630)||(27092762-27092817)
chr7 (575-630)||(27185484-27185539)
[»] scaffold1163 (2 HSPs)
scaffold1163 (659-724)||(2468-2533)
scaffold1163 (337-373)||(2254-2290)


Alignment Details
Target: chr6 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 10 - 724
Target Start/End: Original strand, 5951298 - 5952012
Alignment:
Q  10 catcatcagacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactcgcgtgcttctgc 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5951298 catcatcagacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactctcgtgcttctgc 5951397  T
Q  110 atcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaagatagaaaaaatacttatatattatttcgagtttactagtatcattaaact 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951398 atcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaagatagaaaaaatacttatatattatttcgagtttactagtatcattaaact 5951497  T
Q  210 ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951498 ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgtgccgggttagtacactcactatatggatagtctgatgtcataatttccaaaac 5951597  T
Q  310 acacatgccaaatgagtaaacatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagta 409  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951598 acacatgccaaatgagtacacatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaagagaaagta 5951697  T
Q  410 ttaacgcagaattattagagcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtacctataacactg 509  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5951698 ttaacacagaattattagagcggctcactacttgcaacagaagatgtagcctagtaatatgagttgccgaaggatatcaaaataagtaccaataacactg 5951797  T
Q  510 tgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggt 609  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951798 tgtgccggctgcgaaccacgaagaatcgctgctagacccaggtcaccaattttcacttgtccaagatggccattgacaaatatgttatcgcacttgaggt 5951897  T
Q  610 ctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgtctacatgcttata 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5951898 ctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttgcatgtctacatgcttata 5951997  T
Q  710 tttcttcctgtatct 724  Q
    |||||||||||||||    
T  5951998 tttcttcctgtatct 5952012  T

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Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 225 - 400
Target Start/End: Original strand, 31951650 - 31951825
Alignment:
Q  225 aatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaacacacatgccaaatga 324  Q
    |||||||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| || ||||| |  |||||||| |||||||||||||||||    
T  31951650 aatttaccgatgtcactttcttgtatatctgtgctggattagtacattcactatatggataatcagatgtgagcatttccaatacacacatgccaaatga 31951749  T
Q  325 gtaaacatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctgccacaaaa 400  Q
    |||||||||| ||||||||||||||||||| |||||||  || ||||||||||||||||| ||||||  |||||||    
T  31951750 gtaaacatcagcaagttcattgtattcttcctcgtacatttccggtgccatgaactccggtgttcctaacacaaaa 31951825  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 492 - 691
Target Start/End: Original strand, 31952004 - 31952203
Alignment:
Q  492 taagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaata 591  Q
    ||||||||||||||||| || || |  || |||||  | ||||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  31952004 taagtacctataacactatgagctgattgagaaccttggagaattgcagctagtccaaggtcaccaattttcacttgtccaagatgaccattgacaaata 31952103  T
Q  592 tgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattgcttg 691  Q
    ||||||| || || ||||| ||||| ||||| || ||||||||  |||||| |||||| ||||| ||||| ||||||||  |||||||||||||||||||    
T  31952104 tgttatcacattttaggtccctatggattacaggtggatcatggccatgtaaataaactagaccttgtaaaatttggcgcgcccaactctttattgcttg 31952203  T

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Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 488 - 646
Target Start/End: Complemental strand, 28188450 - 28188292
Alignment:
Q  488 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 587  Q
    ||||||||||| |||||||||||| |  || |||||| ||||||||||||||| |||||| | ||||||||||||   |||||||||||| |||||||||    
T  28188450 aaaataagtacttataacactgtgcgttggttgcgaaacacgaagaatcgctgttagacccaagtcaccaatttttgtttgtccaagatgtccattgaca 28188351  T
Q  588 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 646  Q
    | ||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||    
T  28188350 agtatgttatcacacttgaggtccctatgaattactggatgatcatgttcatgtagata 28188292  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 488 - 687
Target Start/End: Original strand, 18077779 - 18077978
Alignment:
Q  488 aaaataagtacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgaca 587  Q
    |||| |||||||||||||||||||||| ||||  |||||| | |||||| ||||||||| || || | || |||||||||||| |||| | |||||||||    
T  18077779 aaaacaagtacctataacactgtgtgctggctatgaaccatggagaatccctgctagacttaagtaaacagttttcacttgtcaaagacgtccattgaca 18077878  T
Q  588 aatatgttatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagataaacaagaccgtgtaagatttggcgaacccaactctttattg 687  Q
    ||||   |||| |  |||||||  |||||||||||| | |||||||| |||||||||||||||||||| | ||| ||||| ||  |||||||||||||||    
T  18077879 aatactatatcacgtttgaggttcctatgaattacccgtggatcatgttcatgtagataaacaagaccctctaacatttgacgtgcccaactctttattg 18077978  T

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Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 28188708 - 28188578
Alignment:
Q  241 tttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaacacacatgccaaatgagtaaacatcaacaagt 340  Q
    |||||||||||| | ||| | ||||| |||||||||||| ||| | |   |||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  28188708 tttcttgtatatctacgccgtgttagcacactcactataaggacaataatatgtaataatttccaaagcacacatgccaaatgagtacacatcaacaagt 28188609  T
Q  341 tcattgtattcttcttcgtacaactctggtg 371  Q
    |||||||||||||| || ||||  |||||||    
T  28188608 tcattgtattcttcatcatacagttctggtg 28188578  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 28153921 - 28153837
Alignment:
Q  75 actaggcattttccaataaactcgcgtgcttctgcatcttcaattcggaaaagtgttgctggtagcttaccctgaacattgaaag 159  Q
    |||||||||||||||||||||||   ||||| ||||||||||| || ||||||||||||||||||| |||| |||||||| ||||    
T  28153921 actaggcattttccaataaactccaatgcttttgcatcttcaaatcagaaaagtgttgctggtagcataccttgaacattaaaag 28153837  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 646
Target Start/End: Complemental strand, 28153806 - 28153709
Alignment:
Q  551 gtcaccaattttcacttgtccaagatggccattgacaaatatgt--tatcgcacttgaggtctctatgaattaccggaggatcatgctcatgtagata 646  Q
    ||||||||||||  ||||||||||||| |||||||||| |||||  |||| ||||||||||| |||||| |||| ||| ||||||| |||||||||||    
T  28153806 gtcaccaatttttgcttgtccaagatgtccattgacaagtatgttatatcacacttgaggtccctatgagttactggatgatcatgttcatgtagata 28153709  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 299 - 392
Target Start/End: Original strand, 36630146 - 36630239
Alignment:
Q  299 atttccaaaacacacatgccaaatgagtaaacatcaacaagttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 392  Q
    |||||||| | |||||||||||| || || || ||||||||||||||||||||||| || || | |||||| |||||||| || ||||| ||||    
T  36630146 atttccaagatacacatgccaaaggaatatacgtcaacaagttcattgtattcttcctcataaagctctggggccatgaattctggagtacctg 36630239  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 28507736 - 28507834
Alignment:
Q  210 ttaaaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcactatatggatagtctgatgtcataatttccaaaa 308  Q
    ||||||||| ||| ||||| | |||| |||||||||||||||| || || | ||  ||||| ||||||||| ||||||| ||||| || ||||||||||    
T  28507736 ttaaaccaaattcgtaattaaacgatttcactttcttgtatatatgtgccgagtctgtacattcactatatagatagtcagatgtaatcatttccaaaa 28507834  T

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Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 22396537 - 22396679
Alignment:
Q  17 agacacaagaaatggatcatgcaacagttcttttgctgatggtctccttgctgcatttactaggcattttccaataaactcgcgtgcttctgcatcttca 116  Q
    ||||||||||||||||||||||| ||||| ||||||  | ||| |  || |||| || |||||||||||| |||||||||| ||| |||| ||||||||     
T  22396537 agacacaagaaatggatcatgcagcagttattttgccaaaggtttttttactgctttcactaggcatttttcaataaactctcgtacttcggcatcttct 22396636  T
Q  117 attcggaaaagtgttgctggtagcttaccctgaacattgaaag 159  Q
    ||  ||| ||||| | |||||||||||| ||||||||| ||||    
T  22396637 atcaggataagtgcttctggtagcttacactgaacattaaaag 22396679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 22396747 - 22396811
Alignment:
Q  213 aaccaagttcttaatttaccgatgtcactttcttgtatatttgcgctgggttagtacactcacta 277  Q
    ||||||| ||| ||||||||||||||||||||||| |||   | ||||||| |||||||||||||    
T  22396747 aaccaagatctgaatttaccgatgtcactttcttgaataacagagctgggtcagtacactcacta 22396811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 676 - 724
Target Start/End: Original strand, 22397077 - 22397125
Alignment:
Q  676 aactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 724  Q
    ||||||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  22397077 aactctttattgcttacatgcctatatgattatatttcttcctgtatct 22397125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 598
Target Start/End: Original strand, 22396983 - 22397024
Alignment:
Q  557 aattttcacttgtccaagatggccattgacaaatatgttatc 598  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  22396983 aattttcacgtgtccaagatgtccattgacaaatgtgttatc 22397024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 496 - 634
Target Start/End: Complemental strand, 9908003 - 9907865
Alignment:
Q  496 tacctataacactgtgtgccggctgcgaaccacgaagaatcgctgctagacctaggtcaccaattttcacttgtccaagatggccattgacaaatatgtt 595  Q
    ||||||| |||||||||||  | || || ||||||||||| ||||| || ||||  |||||||| || || |  || | ||| ||||||||||| |||||    
T  9908003 tacctatgacactgtgtgcatgttgggagccacgaagaattgctgcaagccctaaatcaccaatcttgaccttacccatatgaccattgacaaagatgtt 9907904  T
Q  596 atcgcacttgaggtctctatgaattaccggaggatcatg 634  Q
    ||| ||||| ||||||||||| || || |||||||||||    
T  9907903 atcacactttaggtctctatgtatcacaggaggatcatg 9907865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 27092402 - 27092456
Alignment:
Q  338 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 392  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27092402 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27092456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 27185899 - 27185845
Alignment:
Q  338 agttcattgtattcttcttcgtacaactctggtgccatgaactccggagttcctg 392  Q
    |||||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||    
T  27185899 agttcattgtatttctcttcgtacaattctggtgccatgaactctggagtacctg 27185845  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 630
Target Start/End: Original strand, 27092762 - 27092817
Alignment:
Q  575 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 630  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27092762 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27092817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 630
Target Start/End: Complemental strand, 27185539 - 27185484
Alignment:
Q  575 atggccattgacaaatatgttatcgcacttgaggtctctatgaattaccggaggat 630  Q
    |||||||||||||||||| ||||| || |||||||||||||| || || |||||||    
T  27185539 atggccattgacaaatatattatcacatttgaggtctctatgtatcacaggaggat 27185484  T

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Target: scaffold1163 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 659 - 724
Target Start/End: Original strand, 2468 - 2533
Alignment:
Q  659 taagatttggcgaacccaactctttattgcttgcatgtctacatgcttatatttcttcctgtatct 724  Q
    |||||||||||||  | || |||||||||||| |||| ||| ||| ||||||||||||||||||||    
T  2468 taagatttggcgaggctaattctttattgcttacatgcctatatgattatatttcttcctgtatct 2533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 373
Target Start/End: Original strand, 2254 - 2290
Alignment:
Q  337 aagttcattgtattcttcttcgtacaactctggtgcc 373  Q
    ||||||||||||||||||||||||||| |||||||||    
T  2254 aagttcattgtattcttcttcgtacaattctggtgcc 2290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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