View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_5 (Length: 668)
Name: NF13231_low_5
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 407 - 649
Target Start/End: Complemental strand, 11402580 - 11402336
Alignment:
| Q |
407 |
catatgaactttatttatattttaaatatttgttgaaatttaaaaatatgagtgaact-aacacttgctagttatttaaaaataagatggtatattttta |
505 |
Q |
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| T |
11402580 |
catatgaactttatttatattttaaatatttgttgaaatttaaaaatatgagtgaacttaacacttgctagttatttaaaaataagatggtatattttta |
11402481 |
T |
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| Q |
506 |
ttatgatcttgaaaatagttgatgcactttttccataaccaaatttgcttcttctgttggac-tgcaacttatatttcatgatggtgtagggaaagtttc |
604 |
Q |
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| T |
11402480 |
ttatgatcttgaaaatagttgatgcactttttccataacaaaatttgcttctgctgttggacttgtaacttatagtttacgatggtgtagggaaagtttc |
11402381 |
T |
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| Q |
605 |
catctatatttctaccagtagaaattaaaaacataacgaaagcaa |
649 |
Q |
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| T |
11402380 |
catctatatttctaccagtagaaattaaaaacataacaaaagcaa |
11402336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 11402976 - 11402787
Alignment:
| Q |
11 |
cagagaacacaccatatgagtatgagataagaggtcatttcctcaaaaaaggagataaagaggtcatgatttggaaaaatcatttgagacca-tttgcgg |
109 |
Q |
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| T |
11402976 |
cagagaacacaccatatgagtatgagataagaggtcatttcctcaaaaaaggagataaagaggtcatgatttggaaaaatcatttgagaccattttgcgg |
11402877 |
T |
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| Q |
110 |
tcatgacaaagacttgaaaattccacnnnnnnnnntaaatttagacgaatgatgtagttaaaaaatactattgtaggtaaataaaattctc |
200 |
Q |
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| T |
11402876 |
tcatgacaaagacttgaaaattccac-aaaaaaaataaatttatacgaatgatgtagttaaaaaattctattgtaggtaaataaaattctc |
11402787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 261 - 299
Target Start/End: Complemental strand, 11402726 - 11402688
Alignment:
| Q |
261 |
ctttgtattccattcaaggactcactaaaacttatatca |
299 |
Q |
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| T |
11402726 |
ctttgtatcccattcaaggactcactaaaacttatatca |
11402688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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