View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_6 (Length: 609)
Name: NF13231_low_6
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 591
Target Start/End: Original strand, 2032143 - 2032726
Alignment:
| Q |
10 |
agtagcataggacacaatttagatccgtaattaataaaatttaatnnnnnnnnncttatacaaaagtctaatacttttaaaggaaaatacattaataatt |
109 |
Q |
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| T |
2032143 |
agtagcataggacacaatttagatccgtaattaataaaatttaataaaaaaaaacttatacaaaagtctaatacttttaaaggaaaatacattaataatt |
2032242 |
T |
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| Q |
110 |
caacattaattaattataacctctacttagaaaaagatatttgtgattaaaataaaaattgtatttgtgctagtaatcttatcgtgtgagttaattc-tt |
208 |
Q |
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| T |
2032243 |
caacattaatt---tataacctctacttagaaaaagatatttgtgattaaaataaaaattttatttgtgctagtaatcttatcgtgtaagttaattcttt |
2032339 |
T |
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| Q |
209 |
ttttgtaataatctctattaatttcataaatgattaaactcc---nnnnnnnnnnnggtacaaaattattaaactcctttattgatgtgctgctatttta |
305 |
Q |
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| T |
2032340 |
ttttgtaataatctctattaatttcataaatgattaaactccttttttttttttttggtacaaaattattaaactcctttattgatgtgctgctatttta |
2032439 |
T |
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| Q |
306 |
ccttatgattatcaatcttaaccctagtctgacgaaggaaatatttcggttgattaattnnnnnnnnttatcggagtttaaagtagaagtcccaagttcg |
405 |
Q |
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| T |
2032440 |
ccttatgattatcaatcttaaccctagtctaacgaaggaaataattcggttgatgaattaagaaacattatcggagtttaaaatagaggtcccaggttcg |
2032539 |
T |
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| Q |
406 |
atccctaaaactaatttaaccaccggtttaataatcaaactgaggtaaagcgacaataatacatttacttgtatacacacagcaacagtaatttctaggg |
505 |
Q |
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| T |
2032540 |
atctcaaaaacaaatttaaccaccgatttaataatcaaactgagataaagctacaataatacatttacttgtatacacacagcaacactaatttctaggg |
2032639 |
T |
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| Q |
506 |
tgcctctnnnnnnncact-aattttttagggtgataacatattttcttatcattaatcaatactatttatacttcactgtgtaaagt |
591 |
Q |
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| T |
2032640 |
tgcctctaaaaaaacactaaattttttagggtgataacatattttcttatcattaatcaatactatttatacttcactgtgtaaagt |
2032726 |
T |
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