View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13231_low_8 (Length: 544)
Name: NF13231_low_8
Description: NF13231
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13231_low_8 |
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| [»] scaffold0440 (2 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 14515 - 14600
Alignment:
| Q |
376 |
ccaacctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatggagcagaagaaaatcaaacaaagtcgtat |
461 |
Q |
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| T |
14515 |
ccaacctttaattgaacgatggctatgaacgaaagagaaaatgaagaagaaacgatggaacagaagaaaatcaaacaaagtcgtat |
14600 |
T |
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Target: scaffold0440; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 288
Target Start/End: Original strand, 14378 - 14427
Alignment:
| Q |
239 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
288 |
Q |
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| T |
14378 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgagca |
14427 |
T |
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Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 437 - 527
Target Start/End: Complemental strand, 25456653 - 25456559
Alignment:
| Q |
437 |
agaagaaaatcaaacaaagtcgtataacctgcctatatata----aggaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatattt |
527 |
Q |
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| T |
25456653 |
agaagaaaatgaaacaaagtcgtataacctgcctatatatatataaggaaaaaacgatgacttgtcaagaaagaaaactcatcaattacatattt |
25456559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 25456739 - 25456687
Alignment:
| Q |
380 |
cctttaattgaacgatggcaatgaacgaaagagaaaatgaagaagaaacgatg |
432 |
Q |
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| T |
25456739 |
cctttaattgaacgatggcgatgaacgaaagagaaaatgaagaagaaacgatg |
25456687 |
T |
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Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 25456880 - 25456833
Alignment:
| Q |
239 |
atatcacgcatacaaaactcaatttctcaatcgactaagctggatgag |
286 |
Q |
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| T |
25456880 |
atatcacgcatacaaaactcaatttctcattcgactaagctggatgag |
25456833 |
T |
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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 480 - 527
Target Start/End: Original strand, 1966143 - 1966190
Alignment:
| Q |
480 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatattt |
527 |
Q |
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| T |
1966143 |
gaaaaaacgatgacctgtcaagaaagaaaactcatcaattacatattt |
1966190 |
T |
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