View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13232_high_1 (Length: 783)

Name: NF13232_high_1
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13232_high_1
NF13232_high_1
[»] chr4 (4 HSPs)
chr4 (463-767)||(22461274-22461582)
chr4 (368-462)||(12105365-12105459)
chr4 (368-450)||(46644135-46644217)
chr4 (368-463)||(32179254-32179344)
[»] chr2 (2 HSPs)
chr2 (188-462)||(6408147-6408413)
chr2 (368-442)||(5568350-5568424)
[»] chr5 (1 HSPs)
chr5 (368-455)||(18598940-18599026)
[»] chr3 (1 HSPs)
chr3 (368-450)||(1326444-1326526)
[»] chr6 (1 HSPs)
chr6 (368-462)||(23267273-23267365)
[»] chr1 (1 HSPs)
chr1 (368-426)||(9380054-9380112)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 463 - 767
Target Start/End: Original strand, 22461274 - 22461582
Alignment:
Q  463 aattcataactaggaggaattcataactataaagtacactctta----tccattaagttccatattttaccctagttttgagaaccctatatgccatctc 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22461274 aattcataactaggaggaattcataactataaagtacactcttacttatccattaagttccatattttaccctagttttgagaaccctatatgccatctc 22461373  T
Q  559 acaaaaccatttcattctacattgaaaagctttatcatccaaacctaaaaatcaaaatggaaaagatgtaatgtaatcattctcatctataaaatttaaa 658  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22461374 acaaaaccatttcattctacactgaaaagctttatcatccaaacctaaaaatcaaaatggaaaagatgtaatgtaatcattcttatctataaaatttaaa 22461473  T
Q  659 tacgtaatatatacaataactttgggagattcatatattttttaacaatacaagttaataagggacctaaaagtatattagaaattaagtaaatttgtca 758  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22461474 tacgtaatatatacaataactttgggagattcatatattttttaacaatacaagttaataagggacctaaaagtatattagaaattaaataaatttgtca 22461573  T
Q  759 cttatcaag 767  Q
    |||||||||    
T  22461574 cttatcaag 22461582  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 462
Target Start/End: Original strand, 12105365 - 12105459
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcc 462  Q
    |||| ||||||||||||||||| || ||| |||||||||||||||||||| ||| |||  ||||||||||||| ||||||||| |||| ||||||    
T  12105365 gagttgttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc 12105459  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 450
Target Start/End: Complemental strand, 46644217 - 46644135
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctat 450  Q
    |||| ||||| ||||||||||| || ||||||||||||||||||| |||| |||||||  |||||||||||||||||||||||    
T  46644217 gagtagttgtaagatgaaattcctaaaatgtcccttgccacatcaccagtggtacaaaagggtgtaccaaaagagtggtctat 46644135  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 32179254 - 32179344
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcca 463  Q
    |||||||||||||||||||||| || ||| |||||||||||||||||||| |||||||| |||||||     ||||||||||| |||| |||||||    
T  32179254 gagtggttgtgagatgaaattcctaaaatatcccttgccacatcagcagtggtacaaaggggtgtac-----gagtggtctatgtatctttttcca 32179344  T

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Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 188 - 462
Target Start/End: Original strand, 6408147 - 6408413
Alignment:
Q  188 tgttaaccagcgatcgttgcctccggcgagagagatggcgagaggagatgtgagatctgacatcaaggacggcggagatgaggacggggagcggcggaga 287  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6408147 tgttaaccagcgat-gttgcctccggcgagagagatggcgagaggagatgtgagatctgacatcaaggacggcggagatgaggacagggagcggcggaga 6408245  T
Q  288 tggggcggaggtaggaggccgagtgttggagaagaggagaaaccgtgaaaagctaaagaaagggagaagagagagtggttgagtggttgtgagatgaaat 387  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |  || ||||||||||        ||||||||||||||||||||    
T  6408246 tggggcggaggtaggaggctgagtgttggagaagaggagaaaccgtgaaaagctacatgaa-ggagaagaga--------gagtggttgtgagatgaaat 6408336  T
Q  388 tcgtataatgtcccttgccacatcagcagttgtacaaagaggtg--taccaaaagagtggtctatttatcattttcc 462  Q
    || || ||| ||||||||||||| |||||| |||||||| ||||  |||||||||||| ||||||||||||||||||    
T  6408337 tcctaaaatatcccttgccacatgagcagtggtacaaaggggtgtataccaaaagagttgtctatttatcattttcc 6408413  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Original strand, 5568350 - 5568424
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagag 442  Q
    |||||| ||||||||||||||  || |||||||||||||||||||||||| |||||||| ||||||  |||||||    
T  5568350 gagtggatgtgagatgaaatttctaaaatgtcccttgccacatcagcagtggtacaaaggggtgtattaaaagag 5568424  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 368 - 455
Target Start/End: Complemental strand, 18599026 - 18598940
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatc 455  Q
    |||||||||||||||| ||||| || |||||||||| |||||||| |||| |||||||| ||||||||||||||||||||||| ||||    
T  18599026 gagtggttgtgagatgtaattcttaaaatgtcccttaccacatcaacagtggtacaaag-ggtgtaccaaaagagtggtctatgtatc 18598940  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 368 - 450
Target Start/End: Original strand, 1326444 - 1326526
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctat 450  Q
    |||| ||||||||||||||||| || |||||||||||||||||||||||| |||||||   |||||||||||| |||||||||    
T  1326444 gagtagttgtgagatgaaattcctaaaatgtcccttgccacatcagcagtggtacaaaagagtgtaccaaaagggtggtctat 1326526  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 23267365 - 23267273
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaagaggtgtaccaaaagagtggtctatttatcattttcc 462  Q
    |||||| ||||||||||||| | || |||||||||||||||||||  || ||||||||| ||| ||||||||||||||||||| |||| ||||||    
T  23267365 gagtggctgtgagatgaaatccctaaaatgtcccttgccacatcaatag-tgtacaaag-ggtctaccaaaagagtggtctatgtatctttttcc 23267273  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 368 - 426
Target Start/End: Original strand, 9380054 - 9380112
Alignment:
Q  368 gagtggttgtgagatgaaattcgtataatgtcccttgccacatcagcagttgtacaaag 426  Q
    |||||||||||||||||||| | || |||||||||||||||||||||||| ||||||||    
T  9380054 gagtggttgtgagatgaaatccctaaaatgtcccttgccacatcagcagtggtacaaag 9380112  T

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