View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13232_high_2 (Length: 535)

Name: NF13232_high_2
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13232_high_2
NF13232_high_2
[»] chr5 (4 HSPs)
chr5 (11-486)||(12487433-12487914)
chr5 (474-518)||(1105117-1105161)
chr5 (482-518)||(32108803-32108839)
chr5 (490-518)||(35609306-35609334)
[»] chr7 (9 HSPs)
chr7 (473-518)||(31846972-31847017)
chr7 (483-518)||(23676128-23676163)
chr7 (485-518)||(45671212-45671245)
chr7 (482-518)||(3975807-3975843)
chr7 (486-518)||(6589243-6589275)
chr7 (490-518)||(30223764-30223792)
chr7 (486-518)||(38186365-38186397)
chr7 (486-518)||(39520699-39520731)
chr7 (486-518)||(48192256-48192288)
[»] chr8 (4 HSPs)
chr8 (474-518)||(3512235-3512279)
chr8 (482-518)||(11976705-11976741)
chr8 (472-518)||(28346727-28346772)
chr8 (477-518)||(10337109-10337150)
[»] chr4 (8 HSPs)
chr4 (482-518)||(51738380-51738416)
chr4 (480-518)||(20144413-20144451)
chr4 (485-518)||(30060767-30060800)
chr4 (485-518)||(30091083-30091116)
chr4 (482-518)||(14488156-14488192)
chr4 (486-518)||(29499515-29499547)
chr4 (486-518)||(50753921-50753953)
chr4 (486-518)||(54208794-54208826)
[»] chr3 (8 HSPs)
chr3 (483-518)||(1721085-1721120)
chr3 (487-518)||(8555277-8555308)
chr3 (486-518)||(863621-863653)
chr3 (478-518)||(3830485-3830525)
chr3 (486-518)||(8940494-8940526)
chr3 (478-518)||(28552012-28552052)
chr3 (486-518)||(35569105-35569137)
chr3 (483-519)||(47005487-47005523)
[»] chr1 (7 HSPs)
chr1 (483-518)||(3247531-3247566)
chr1 (478-518)||(10887224-10887264)
chr1 (478-518)||(33067339-33067379)
chr1 (486-518)||(38150847-38150879)
chr1 (486-518)||(38163930-38163962)
chr1 (486-518)||(39025108-39025140)
chr1 (482-518)||(45380267-45380303)
[»] scaffold0160 (1 HSPs)
scaffold0160 (476-518)||(27333-27375)
[»] chr2 (4 HSPs)
chr2 (484-518)||(15842458-15842492)
chr2 (485-518)||(3832606-3832639)
chr2 (477-518)||(15842792-15842833)
chr2 (490-518)||(36815804-36815832)
[»] scaffold0024 (1 HSPs)
scaffold0024 (477-518)||(75733-75774)
[»] chr6 (3 HSPs)
chr6 (481-518)||(21994372-21994409)
chr6 (482-518)||(12298817-12298853)
chr6 (482-518)||(22543687-22543723)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 486
Target Start/End: Complemental strand, 12487914 - 12487433
Alignment:
Q  11 catcaaatatgtaaaaatatctgtacagtaattcagtaatataaatataagaggagtgtttacaacagtttctttttaacgatcattcaaacactctttt 110  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||    
T  12487914 catcaaatctgtaaaaatatctgtacagtaattcaggaatataaatataagaggagtgcttacaacagtctctttttaacgatcattcaaacactctctt 12487815  T
Q  111 ttattgagtaaaattaacgtggttattatacttttaaaatggtatccatataagtagtgggagacac--atattttacgcaattaaaaaggaagtgtttg 208  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||    
T  12487814 ttattgagtaaaattaacgtggttattatactttaaaaatgggatccacataagtggtgggagacacatatattttacgcaattaaaaaggaagtgtttg 12487715  T
Q  209 agtgagagtgttgaaattgacacctttgctaatacttctaatataaatattggttcaaattttaaaatatacttggactttcaacaacaacaaaaattaa 308  Q
    |||  ||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |     
T  12487714 agt--gagtgttgaaa-tgacacctttgctaatacttcaaatataaatattggttgaaattttaaaatatacttggactttcaacaac-acaaaaa--ag 12487621  T
Q  309 tacattgtgtgttttgtttaaaagaaattagtacattgtgttgttac---------tacaaaagatgtattttttgtgttaagtgtagattctctgcaac 399  Q
    | |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||| |||    
T  12487620 tgcattgtgtgttttgtttaaaagaaattagtacattgtgttgttactacaaaagatacaaaagatgtattttttgtgttaagtgtagattctctggaac 12487521  T
Q  400 acaattgcatagacgggtccttcg-atctgatagaatcacagtagattaatnnnnnnnntgtatttcatatacatatattaatattta 486  Q
    ||||||||||||| |||||||||| ||| |||||||||||| |||||| ||        |||||||||||||||||||||||||||||    
T  12487520 acaattgcatagatgggtccttcgaatccgatagaatcacaatagattgataaaaaaaatgtatttcatatacatatattaatattta 12487433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 1105161 - 1105117
Alignment:
Q  474 atattaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||  |||||| ||||||||||||||||||| |||||||||    
T  1105161 atattaaactttaggctaaaatatggttttggtccctgcaaatat 1105117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Original strand, 32108803 - 32108839
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  32108803 atttaggctaaaatatggttttggtccctgcaaatat 32108839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 518
Target Start/End: Original strand, 35609306 - 35609334
Alignment:
Q  490 taaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||||||    
T  35609306 taaaatatggttttggtccatgcaaatat 35609334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 518
Target Start/End: Original strand, 31846972 - 31847017
Alignment:
Q  473 tatattaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||    
T  31846972 tatattaatttttaggttaaaatatgcttttggtccctgcaaatat 31847017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 518
Target Start/End: Original strand, 23676128 - 23676163
Alignment:
Q  483 tttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||| |||||||||    
T  23676128 tttaggttaaaatatggttttggtccctgcaaatat 23676163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 45671212 - 45671245
Alignment:
Q  485 taggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||| ||||||||||||||    
T  45671212 taggttaaaatatggttttagtccatgcaaatat 45671245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 3975843 - 3975807
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  3975843 atttaggctaaaatatggttttggtccctgcaaatat 3975807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 6589275 - 6589243
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  6589275 aggttaaaatatggttttggtccctgcaaatat 6589243  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 518
Target Start/End: Complemental strand, 30223792 - 30223764
Alignment:
Q  490 taaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||||||    
T  30223792 taaaatatggttttggtccatgcaaatat 30223764  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 38186365 - 38186397
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  38186365 aggttaaaatatggttttggtccctgcaaatat 38186397  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 39520731 - 39520699
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  39520731 aggttaaaatatggttttggtccttgcaaatat 39520699  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 48192256 - 48192288
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  48192256 aggttaaaatatggttttggtccctgcaaatat 48192288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 474 - 518
Target Start/End: Complemental strand, 3512279 - 3512235
Alignment:
Q  474 atattaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||| ||||||||||||||||||| |||||||||    
T  3512279 atattaaaatttaggctaaaatatggttttggtccctgcaaatat 3512235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 11976741 - 11976705
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11976741 atttaggttaaaatatggttttggtccctgcaaatat 11976705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 518
Target Start/End: Complemental strand, 28346772 - 28346727
Alignment:
Q  472 atatattaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||    
T  28346772 atatattaat-tttaggctaaaatatggttttggtccctgcaaatat 28346727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Original strand, 10337109 - 10337150
Alignment:
Q  477 ttaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||| |||||| ||||||||||||||||||| |||||||||    
T  10337109 ttaatttttaggctaaaatatggttttggtccctgcaaatat 10337150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 51738416 - 51738380
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| |||||||||||||||||||||||||||||    
T  51738416 atttaggctaaaatatggttttggtccatgcaaatat 51738380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 518
Target Start/End: Original strand, 20144413 - 20144451
Alignment:
Q  480 atatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  20144413 atatttacgttaaaatatggttttggtccctgcaaatat 20144451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 30060767 - 30060800
Alignment:
Q  485 taggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||| |||||||||    
T  30060767 taggttaaaatatggttttggtccctgcaaatat 30060800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 30091116 - 30091083
Alignment:
Q  485 taggttaaaatatggttttggtccatgcaaatat 518  Q
    |||| |||||||||||||||||||||||||||||    
T  30091116 taggctaaaatatggttttggtccatgcaaatat 30091083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 14488192 - 14488156
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  14488192 atttaggctaaaatatggttttggtccctgcaaatat 14488156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 29499547 - 29499515
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  29499547 aggttaaaatatggttttggtccctgcaaatat 29499515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 50753921 - 50753953
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  50753921 aggttaaaatatggttttggtccctgcaaatat 50753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 54208826 - 54208794
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  54208826 aggttaaaatatggttttggtccctgcaaatat 54208794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 518
Target Start/End: Original strand, 1721085 - 1721120
Alignment:
Q  483 tttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||| |||||||||    
T  1721085 tttaggttaaaatatggttttggtccttgcaaatat 1721120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 518
Target Start/End: Complemental strand, 8555308 - 8555277
Alignment:
Q  487 ggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||||||||||||    
T  8555308 ggttaaaatatggttttggtccatgcaaatat 8555277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 863653 - 863621
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  863653 aggttaaaatatggttttggtccctgcaaatat 863621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 518
Target Start/End: Complemental strand, 3830525 - 3830485
Alignment:
Q  478 taatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||| |||||||||||||| |||| |||||||||    
T  3830525 taatatttaggctaaaatatggttttagtccctgcaaatat 3830485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 8940526 - 8940494
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  8940526 aggttaaaatatggttttggtccctgcaaatat 8940494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 28552012 - 28552052
Alignment:
Q  478 taatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||| |||| ||||||||||||||||||| |||||||||    
T  28552012 taatatctaggctaaaatatggttttggtccctgcaaatat 28552052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 35569137 - 35569105
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  35569137 aggttaaaatatggttttggtccctgcaaatat 35569105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 47005523 - 47005487
Alignment:
Q  483 tttaggttaaaatatggttttggtccatgcaaatatt 519  Q
    |||||| ||||||||||||||||||| ||||||||||    
T  47005523 tttaggctaaaatatggttttggtccctgcaaatatt 47005487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 518
Target Start/End: Complemental strand, 3247566 - 3247531
Alignment:
Q  483 tttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||| |||||||||    
T  3247566 tttaggttaaaatatggttttggtccctgcaaatat 3247531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 10887224 - 10887264
Alignment:
Q  478 taatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||| |||||| ||||||||||||||||||| |||||||||    
T  10887224 taatttttaggctaaaatatggttttggtccctgcaaatat 10887264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 478 - 518
Target Start/End: Original strand, 33067339 - 33067379
Alignment:
Q  478 taatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||| |||||||||||||| |||| |||||||||    
T  33067339 taatatttaggctaaaatatggttttagtccttgcaaatat 33067379  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 38150847 - 38150879
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  38150847 aggttaaaatatggttttggtccctgcaaatat 38150879  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 38163930 - 38163962
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  38163930 aggttaaaatatggttttggtccctgcaaatat 38163962  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 39025108 - 39025140
Alignment:
Q  486 aggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||| |||||||||    
T  39025108 aggttaaaatatggttttggtccctgcaaatat 39025140  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Original strand, 45380267 - 45380303
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  45380267 atttaggctaaaatatggttttggtccctgcaaatat 45380303  T

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Target: scaffold0160 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 518
Target Start/End: Complemental strand, 27375 - 27333
Alignment:
Q  476 attaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||| ||||||| ||||||||||||||||||| |||||||||    
T  27375 attaaaatttaggctaaaatatggttttggtccctgcaaatat 27333  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 518
Target Start/End: Original strand, 15842458 - 15842492
Alignment:
Q  484 ttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||||||||||||||||||||| |||||||||    
T  15842458 ttaggttaaaatatggttttggtccctgcaaatat 15842492  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Complemental strand, 3832639 - 3832606
Alignment:
Q  485 taggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||| |||||||||    
T  3832639 taggttaaaatatggttttggtccctgcaaatat 3832606  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 15842833 - 15842792
Alignment:
Q  477 ttaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||| ||| ||||||||||||||||||| |||||||||    
T  15842833 ttaatattaaggctaaaatatggttttggtccctgcaaatat 15842792  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 518
Target Start/End: Complemental strand, 36815832 - 36815804
Alignment:
Q  490 taaaatatggttttggtccatgcaaatat 518  Q
    |||||||||||||||||||||||||||||    
T  36815832 taaaatatggttttggtccatgcaaatat 36815804  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 75774 - 75733
Alignment:
Q  477 ttaatatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||| ||||||| ||||||||||||||||||| |||||||||    
T  75774 ttaaaatttaggctaaaatatggttttggtccctgcaaatat 75733  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 518
Target Start/End: Complemental strand, 21994409 - 21994372
Alignment:
Q  481 tatttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  21994409 tatttaggctaaaatatggttttggtccctgcaaatat 21994372  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Original strand, 12298817 - 12298853
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    |||| |||||||||||||||||||||| |||||||||    
T  12298817 attttggttaaaatatggttttggtccctgcaaatat 12298853  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 22543723 - 22543687
Alignment:
Q  482 atttaggttaaaatatggttttggtccatgcaaatat 518  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  22543723 atttaggctaaaatatggttttggtccctgcaaatat 22543687  T

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