View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13232_high_5 (Length: 409)

Name: NF13232_high_5
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13232_high_5
NF13232_high_5
[»] chr4 (2 HSPs)
chr4 (3-390)||(24282401-24282785)
chr4 (231-279)||(15292789-15292837)
[»] scaffold0124 (1 HSPs)
scaffold0124 (231-281)||(7442-7492)
[»] chr2 (1 HSPs)
chr2 (230-281)||(24831356-24831407)
[»] scaffold0761 (1 HSPs)
scaffold0761 (231-281)||(18-68)
[»] scaffold0692 (1 HSPs)
scaffold0692 (231-281)||(3507-3557)
[»] scaffold0225 (1 HSPs)
scaffold0225 (231-281)||(24018-24068)
[»] scaffold0077 (1 HSPs)
scaffold0077 (231-281)||(27898-27948)
[»] scaffold0076 (1 HSPs)
scaffold0076 (231-281)||(40882-40932)
[»] chr8 (2 HSPs)
chr8 (231-281)||(16877167-16877217)
chr8 (231-281)||(21850409-21850459)
[»] chr7 (2 HSPs)
chr7 (231-281)||(7824482-7824532)
chr7 (231-281)||(27107412-27107462)
[»] chr6 (2 HSPs)
chr6 (231-281)||(16382147-16382197)
chr6 (231-280)||(1648589-1648638)
[»] chr5 (1 HSPs)
chr5 (231-281)||(21936999-21937049)
[»] chr3 (2 HSPs)
chr3 (231-281)||(8274267-8274317)
chr3 (231-281)||(16742571-16742621)
[»] chr1 (2 HSPs)
chr1 (231-281)||(20831093-20831143)
chr1 (231-281)||(20914818-20914868)
[»] scaffold0235 (1 HSPs)
scaffold0235 (237-281)||(26436-26480)
[»] scaffold0023 (1 HSPs)
scaffold0023 (231-279)||(55539-55587)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 390
Target Start/End: Complemental strand, 24282785 - 24282401
Alignment:
Q  3 gatcttcttgctcaaattctaatggtctatcaacatactccaccatcatgatactaacataaaggtgtctgacactaccatccatacaaagcttcatatg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24282785 gatcttcttgctcaaattctaatggtctatcaacatactccaccatcatgatactaacataaatgtgtctgacactaccatccatacaaagcttcatatg 24282686  T
Q  103 gtgactttccaatacccgcacgataactatttttgtatgcttcatgtggatgatataagctgaactcggactcaaccgtgttctcaacattacatgcaac 202  Q
    | | ||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||| |||||||||||| ||||||||||    
T  24282685 gcgcctttccaatacccgcacgataactatttttgtaagcttcatgtggatg--ataagctgaactcggactcaactgtgttctcaacactacatgcaac 24282588  T
Q  203 tcttttaaaaaatgagatgtaaatttaagatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatctcaaccatatagatttcagtca 302  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||| ||| ||||||||||||||||||||| |||||||||    
T  24282587 tcttttaaaaaatgagatgtaaatttaggatctcgatccgacacaat-cttgaaggtacaccatacaacctaacaatctcaaccatataggtttcagtca 24282489  T
Q  303 acttgatcatgccgtaagtagtcgttactggtagaatatgagcatttcggtcacctccatcacctacctaaatcaatatgtatgatgc 390  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24282488 acttgatcatgccgtaagtagtcgttactgatagaatatgagcatttcggtcacctccatcacctacctaaatcaatatgtatgatgc 24282401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 15292837 - 15292789
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaat 279  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||    
T  15292837 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaat 15292789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 7492 - 7442
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||||||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  7492 gatctcgatccgacacaatactagaaggaataccatgcaatctaacaatct 7442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 24831407 - 24831356
Alignment:
Q  230 agatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    ||||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  24831407 agatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 24831356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0761 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 68 - 18
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||||||||| ||| ||||||| ||||| | ||||||||||||||||||||    
T  68 gatctcgatctgacacaatactagaaggaataccatgcaatctaacaatct 18  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 3557 - 3507
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  3557 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 24018 - 24068
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  24018 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 24068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 27948 - 27898
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  27948 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 27898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 40882 - 40932
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  40882 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 40932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 16877217 - 16877167
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  16877217 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 16877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 21850459 - 21850409
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  21850459 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 21850409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 7824482 - 7824532
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  7824482 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 7824532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 27107462 - 27107412
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  27107462 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 27107412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 16382197 - 16382147
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  16382197 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 16382147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 280
Target Start/End: Complemental strand, 1648638 - 1648589
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatc 280  Q
    |||| ||||||||| ||||||| ||||| | |||||||||||||||||||    
T  1648638 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatc 1648589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 21937049 - 21936999
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  21937049 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 21936999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 8274317 - 8274267
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  8274317 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 8274267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 16742621 - 16742571
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  16742621 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 16742571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 20831143 - 20831093
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  20831143 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 20831093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 281
Target Start/End: Original strand, 20914818 - 20914868
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||||    
T  20914818 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaatct 20914868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 26436 - 26480
Alignment:
Q  237 gatccgactcaatacttgaaggcacaccatgcaatctaacaatct 281  Q
    |||||||| ||||||| ||||| | ||||||||||||||||||||    
T  26436 gatccgacacaatactagaaggaataccatgcaatctaacaatct 26480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 55587 - 55539
Alignment:
Q  231 gatctcgatccgactcaatacttgaaggcacaccatgcaatctaacaat 279  Q
    |||| ||||||||| ||||||| ||||| | ||||||||||||||||||    
T  55587 gatcccgatccgacacaatactagaaggaataccatgcaatctaacaat 55539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University