View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13232_high_8 (Length: 324)
Name: NF13232_high_8
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13232_high_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 10 - 324
Target Start/End: Original strand, 44904368 - 44904682
Alignment:
| Q |
10 |
atgaagatgtaatcttgttgcattaagaggtgtagctggtgaaggctttagatatgataaaacaatatccaactttttctctccggctattttttgctgt |
109 |
Q |
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| T |
44904368 |
atgaagatgtaatcttgttgcattaagaggtgtagctggtgaaggctttagatatgataaaacaatatccaactttttctctccggttatttttttctgt |
44904467 |
T |
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| Q |
110 |
gatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatgatgataaaggaagttagtttttaccaagcaattttcataccaagcta |
209 |
Q |
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| T |
44904468 |
gatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatgatgataaaggaagttagtttttactaagcaattttcataccaagcta |
44904567 |
T |
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| Q |
210 |
agaaaaagatctgttgatgaattaaattccgttgtctactttggtatgctttacaatatttatcattggtcatatgaattcattactacatatattctat |
309 |
Q |
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| T |
44904568 |
agaaaaagatctgttgatgaattaaattccgttgtctactttggtatgctttacaatatttatcattggtcatatgaattcattactacatatattttat |
44904667 |
T |
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| Q |
310 |
atgccatcacagcat |
324 |
Q |
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| T |
44904668 |
atgccatcacagcat |
44904682 |
T |
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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 41 - 137
Target Start/End: Original strand, 26192388 - 26192484
Alignment:
| Q |
41 |
gtagctggtgaaggctttagatatgataaaacaatatccaactttttctctccggctattttttgctgtgatttggagttcaataagatgaaacaat |
137 |
Q |
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| T |
26192388 |
gtagctgattaaggctttgaatatgatgaaacaacatccaagtttttctctccagctactttttgctgttatctggagttcaataagatgaatcaat |
26192484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 277
Target Start/End: Original strand, 26180610 - 26180681
Alignment:
| Q |
206 |
gctaagaaaaagatctgttgatgaattaaattccgttgtctactttggtatgctttacaatatttatcattg |
277 |
Q |
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| T |
26180610 |
gctaaggaaaagatgtgatgatgaattaagttttgttgtctactttggttttctttataatatttatcattg |
26180681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 26121552 - 26121601
Alignment:
| Q |
136 |
atccaatcattcatctgcactgcaatgatgataaaggaagttagttttta |
185 |
Q |
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| T |
26121552 |
atccaatcattcttgtgccttgcaatgatgataaaggacgttagttttta |
26121601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 26129805 - 26129854
Alignment:
| Q |
136 |
atccaatcattcatctgcactgcaatgatgataaaggaagttagttttta |
185 |
Q |
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| T |
26129805 |
atccaatcatttttgtgcattgcaatgatgataaaggacgttagttttta |
26129854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 4754373 - 4754444
Alignment:
| Q |
98 |
attttttgctgtgatttggagttcaataagatgaaacaatccaatcattcatctgcactgcaatgatgataaa |
170 |
Q |
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| T |
4754373 |
atttttcgcagtgatttggagttcaataagatgcaac-atccaatcattcttgtgcattgtaattatgataaa |
4754444 |
T |
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