View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13232_low_11 (Length: 233)

Name: NF13232_low_11
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13232_low_11
NF13232_low_11
[»] chr4 (3 HSPs)
chr4 (22-217)||(10581436-10581630)
chr4 (44-175)||(32129014-32129145)
chr4 (76-151)||(10576059-10576134)
[»] chr5 (2 HSPs)
chr5 (18-146)||(18757309-18757437)
chr5 (23-90)||(15375997-15376064)
[»] chr2 (3 HSPs)
chr2 (22-217)||(36461315-36461503)
chr2 (122-217)||(11879563-11879658)
chr2 (97-161)||(14292738-14292802)
[»] chr8 (1 HSPs)
chr8 (23-87)||(24209541-24209605)
[»] chr1 (1 HSPs)
chr1 (95-201)||(12831686-12831792)
[»] scaffold0032 (1 HSPs)
scaffold0032 (22-127)||(25142-25245)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 10581630 - 10581436
Alignment:
Q  22 ctaacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatcactaacatcttttcagggttgtaatggggctcgg 121  Q
    ||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||   ||||| ||||||||||||| ||| ||    
T  10581630 ctaacatcctgatcaagttagacattcatataagcatattaatttgaaagcattaaagcatagatcactaagg-cttttgagggttgtaatggagcttgg 10581532  T
Q  122 ttacaaaagaagtgtcatttatatgagcatttgaatcaaaatggtcttggtatagcctggcattcacacatttaatattttacaataaataaaact 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||    
T  10581531 ttacaaaagaagtgtcatttgtatgagcatttgaatcaaaatggtcttggtatagaggcgcattcacacatttaatattttacaagaaataaaact 10581436  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 175
Target Start/End: Complemental strand, 32129145 - 32129014
Alignment:
Q  44 cattgatataagcatatcagtttgaaagcattaaagcatagatcactaacatcttttcagggttgtaatggggctcggttacaaaagaagtgtcatttat 143  Q
    |||| ||||||||||| |||| |||||||||||||||||| |||| ||| ||||||  ||| |||||||| |||| |||||||||| || |||||||| |    
T  32129145 cattcatataagcataacagtctgaaagcattaaagcatatatcattaagatctttcaaggtttgtaatgaggcttggttacaaaataattgtcatttgt 32129046  T
Q  144 atgagcatttgaatcaaaatggtcttggtata 175  Q
    ||| |||||| | | ||| |||| ||||||||    
T  32129045 atgggcatttaatttaaagtggtattggtata 32129014  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 10576134 - 10576059
Alignment:
Q  76 aaagcatagatcactaacatcttttcagggttgtaatggggctcggttacaaaagaagtgtcatttatatgagcat 151  Q
    |||||||||||||||||| | |||| |||||| |||||| |   |||||||||||||||||||||| |||||||||    
T  10576134 aaagcatagatcactaacgttttttgagggttttaatggagtctggttacaaaagaagtgtcatttgtatgagcat 10576059  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 18757437 - 18757309
Alignment:
Q  18 tatactaacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatcactaacatcttttcagggttgtaatggggc 117  Q
    ||||| ||||||||||||||||||| |||| || ||||||| | |||||||||||| ||||  ||| ||||||||  |||||| || ||| |||||||||    
T  18757437 tatacaaacatcctgatcaagttaggcattcatttaagcatgttagtttgaaagcaataaaagatatatcactaaggtcttttgagagttataatggggc 18757338  T
Q  118 tcggttacaaaagaagtgtcatttatatg 146  Q
      ||||||||||||| |||||||||||||    
T  18757337 atggttacaaaagaattgtcatttatatg 18757309  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 15376064 - 15375997
Alignment:
Q  23 taacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatcact 90  Q
    |||||||||||||||||||| |||| || ||||||||||| |||||||| ||||||  ||||||||||    
T  15376064 taacatcctgatcaagttaggcattcatctaagcatatcaatttgaaagtattaaaatatagatcact 15375997  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 36461503 - 36461315
Alignment:
Q  22 ctaacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatcactaacatcttttc-agggttgtaatggggctcg 120  Q
    ||||||| || |||||| ||| |||| || |||||||||||||||||||||| |||| |||| ||||||||  ||||||  || ||||||||||          
T  36461503 ctaacattctaatcaagctaggcattcatctaagcatatcagtttgaaagcactaaatcatatatcactaaggtctttttgagagttgtaatgg------ 36461410  T
Q  121 gttacaaaagaagtgtcatttatatgagcatttgaatcaaaatggtcttggtatagcctggcattcacacatttaatattttacaataaataaaact 217  Q
     ||||||| ||||||||||||  |||||||||||||||||| |   ||||||||||   |||||||| |||||| ||||| ||||| ||| ||||||    
T  36461409 -ttacaaa-gaagtgtcatttgcatgagcatttgaatcaaagtaaccttggtatagaggggcattcatacatttgatattatacaagaaacaaaact 36461315  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 11879658 - 11879563
Alignment:
Q  122 ttacaaaagaagtgtcatttatatgagcatttgaatcaaaatggtcttggtatagcctggcattcacacatttaatattttacaataaataaaact 217  Q
    ||||||||||| |||||||| |||||| |||||||||||| ||| ||||| ||||    |||||||||||||| ||||||||| | ||| ||||||    
T  11879658 ttacaaaagaaatgtcatttgtatgagtatttgaatcaaagtggccttggaatagaggagcattcacacatttgatattttacgagaaacaaaact 11879563  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 14292738 - 14292802
Alignment:
Q  97 ttttcagggttgtaatggggctcggttacaaaagaagtgtcatttatatgagcatttgaatcaaa 161  Q
    |||| |||||||||||| |||| ||||||||||||| |  ||||| ||||  |||||||||||||    
T  14292738 ttttaagggttgtaatgaggcttggttacaaaagaatttccatttgtatggacatttgaatcaaa 14292802  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 24209541 - 24209605
Alignment:
Q  23 taacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatc 87  Q
    |||||||| ||| ||||||| |||| || |||| |||||||||||||||||||||||||||||||    
T  24209541 taacatcccgattaagttagacattcatctaagtatatcagtttgaaagcattaaagcatagatc 24209605  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 12831686 - 12831792
Alignment:
Q  95 tcttttcagggttgtaatggggctcggttacaaaagaagtgtcatttatatgagcatttgaatcaaaatggtcttggtatagcctggcattcacacattt 194  Q
    |||||| |||||||||||||||   ||||||||||||| |||||| | ||||||| ||||||||||| ||| ||| ||||||    |||||| |||||||    
T  12831686 tcttttaagggttgtaatggggtctggttacaaaagaaatgtcatgtgtatgagcgtttgaatcaaattggccttagtatagaggagcattcgcacattt 12831785  T
Q  195 aatattt 201  Q
     ||||||    
T  12831786 gatattt 12831792  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 25245 - 25142
Alignment:
Q  22 ctaacatcctgatcaagttagccattgatataagcatatcagtttgaaagcattaaagcatagatcactaacatcttttcagggttgtaatggggctcgg 121  Q
    ||||||||||||||||||||| |||  ||  ||||||||   |||||||||| | ||||||||||||||||  || ||| |||||||||||| |||  ||    
T  25245 ctaacatcctgatcaagttaggcatacatccaagcatattcatttgaaagca-tcaagcatagatcactaaggtc-tttaagggttgtaatgaggccggg 25148  T
Q  122 ttacaa 127  Q
    ||||||    
T  25147 ttacaa 25142  T

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