View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13232_low_3 (Length: 451)
Name: NF13232_low_3
Description: NF13232
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13232_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 34452052 - 34452478
Alignment:
| Q |
21 |
aagaggaatctgtgtaagtcaccacaatccactgcaaatgttgtccaaatcagtactcctccttcggaatggctctttgattctgaagcatctcaccata |
120 |
Q |
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| T |
34452052 |
aagaggaatctgtgtaagtcaccacaatccactgcgaatgttgtccaaatcagtactcctccttcggaatggctctttgattctgaagcatctcaccata |
34452151 |
T |
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| Q |
121 |
ttataaatggcttaaataatctcttcatcaagaatgataacacttgttctaatcagttgcatgttgccaatagtaataaacttcatatatctcatttcag |
220 |
Q |
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| T |
34452152 |
ttacaaatggcttaaataatctcttcatcaagaatgataacacttgttctaatcagttgcatgttgccaatagtaataaacttcatatatctcatttcag |
34452251 |
T |
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| Q |
221 |
atgtatcattattcctactaatcgcaaacctctaaaattattgaatgtcttgcgtgtccttgaagtcacacaaaatttagtttcagtttcacaattatgt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34452252 |
atgtatcattattcctactaatcgcaaacctctaaaattattgaatgtcttgcgtgtccttgaagtcacacaaaatttagtttcagtttcacaattatgt |
34452351 |
T |
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| Q |
321 |
gaatctaacaacgtgtctattgaannnnnnnnccttggcattttgaggtaaaggatatgagcacgggggaggttatgttgtgcgggttgaatgatggaaa |
420 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34452352 |
gaatctaacaacgtgtctattgaattttttttccttggcattttgaggtaaaggatatgagcacgggggaggttatgttgtgcgggttgaatgatggaaa |
34452451 |
T |
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| Q |
421 |
tgtctataaactcccttcatctcactc |
447 |
Q |
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|||||||||||||||||| | |||||| |
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| T |
34452452 |
tgtctataaactcccttcctttcactc |
34452478 |
T |
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