View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13233_high_10 (Length: 368)
Name: NF13233_high_10
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 350
Target Start/End: Complemental strand, 36149400 - 36149064
Alignment:
| Q |
14 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149400 |
gaacactctcctaatcaaggacaagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaag |
36149301 |
T |
|
| Q |
114 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149300 |
ttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatcatatgaacg |
36149201 |
T |
|
| Q |
214 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149200 |
tttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacccgtttacgt |
36149101 |
T |
|
| Q |
314 |
gctgcaaatgtcgacactgaaaaactggcacgtgtgg |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149100 |
gctgcaaatgtcgacactgaaaaactggcacgtgtgg |
36149064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 105 - 348
Target Start/End: Complemental strand, 36083412 - 36083169
Alignment:
| Q |
105 |
tgcatgaagttgaagccattcttgaatacgaatttaagaacaaactattactagaagaggctttcactcatggtacttatggtgctgagaatggcttatc |
204 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
36083412 |
tgcatgaagtggaagcaattctagaatacgaatttaagaacatactattgctagaagaggctttcactcactgtacttacggtgctgagaatggcttatc |
36083313 |
T |
|
| Q |
205 |
atatgaacgtttggaatatgtaggtgattcagttcttaacctaatgataacaaaggaacagtttcaagcatatccaaccctagcaccaggtcacttgacc |
304 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
36083312 |
ttatgagcgtttggaatacataggtgattcagttcttaacctaatgataacaacggaacaatttcatgcatatccaacgctggcaccaggtcacttgacc |
36083213 |
T |
|
| Q |
305 |
cgtttacgtgctgcaaatgtcgacactgaaaaactggcacgtgt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36083212 |
cgtttacgtgctgcaaatgtcgacactgaaaaacttgcacgtgt |
36083169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 26527625 - 26527763
Alignment:
| Q |
36 |
aagaagtagcacacgtgaaggaagatgagactgatgcagagacaaaagaaaatgactctccaccaccattgcatgaagttgaagccattcttgaatacga |
135 |
Q |
| |
|
|||||| || |||| |||||||| |||||| |||||| |||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
26527625 |
aagaagaagaacacatgaaggaaaatgagaatgatgcggagacagaagaaaatgattctccaccaccaccgcatgaagtggaagccattcttgaatacga |
26527724 |
T |
|
| Q |
136 |
atttaagaacaaactattactagaagaggctttcactca |
174 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26527725 |
attcaagaacaaactattactagaagaggctttcactca |
26527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University