View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13233_high_14 (Length: 226)
Name: NF13233_high_14
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 36149415 - 36149632
Alignment:
| Q |
1 |
ttttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36149415 |
ttttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccattgtgtgtggaattacttcgacaccatgcagtggtggcggcgg |
36149514 |
T |
|
| Q |
101 |
tgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgtgtaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36149515 |
tgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcacatgtgtaa |
36149614 |
T |
|
| Q |
201 |
ttgacaagttcttcttct |
218 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
36149615 |
ttgacaagtgcttcttct |
36149632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 36083446 - 36083533
Alignment:
| Q |
112 |
gagaatcattttccatcatgggaacttcttcttgt---tgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
196 |
Q |
| |
|
|||||||| ||||| ||||| | |||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
36083446 |
gagaatcactttccttcatgtgtacttcttcttgtccttgtttcggagagtgttcttcttctttgtcatttattttgagtgcacatgt |
36083533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 36149636 - 36149799
Alignment:
| Q |
36 |
tctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcggcggtg------aaggaggcggagaatcattttccatca |
129 |
Q |
| |
|
|||||||||| ||||| ||||||| |||||||||| ||||| || | ||||| ||||||| |||| ||||||||||||||||| ||||| ||| |
|
|
| T |
36149636 |
tctttgtgaatttgagcttccatgatgtgtggaatcacttccacttcttgcagctgtggcggtggtggtggtgaaggaggcggagaatcactttccttca |
36149735 |
T |
|
| Q |
130 |
tgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatatgt |
196 |
Q |
| |
|
| | ||||||| || | | || |||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
36149736 |
tttgcacttctttttctagcttgggagag---tcttcttctttctcatctattttgagtgcacatgt |
36149799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 26527579 - 26527381
Alignment:
| Q |
1 |
ttttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacttgagattccatggtgtgtggaattacttcgacaccatgcagtggtggcg---- |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||| || ||| ||| |||||| |
|
|
| T |
26527579 |
ttttcagtgcgcatgtttggatgatgagtgcttcttctttgtgaacatgagcttccatggtgtggggaatcacttccacttcatacagcagtggcggtgg |
26527480 |
T |
|
| Q |
97 |
--gcggtgaaggaggcggagaatcattttccatcatgggaacttcttcttgttgtttaggagagtgttcttcttctttgtcatctattttgagtgcatat |
194 |
Q |
| |
|
| ||||||||||||||| ||||| |||| ||||| | ||||||| || | | || |||||||| ||||||| | |||||||||||||||||| || |
|
|
| T |
26527479 |
tagtggtgaaggaggcggaaaatcactttcattcatgtgcacttctttttctagcttgggagagtg---ttcttctatctcatctattttgagtgcacat |
26527383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University