View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13233_high_16 (Length: 222)

Name: NF13233_high_16
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13233_high_16
NF13233_high_16
[»] chr1 (5 HSPs)
chr1 (15-222)||(47159126-47159333)
chr1 (64-222)||(34666002-34666162)
chr1 (29-147)||(31973493-31973611)
chr1 (50-137)||(43834387-43834474)
chr1 (66-151)||(4753119-4753203)
[»] chr7 (3 HSPs)
chr7 (50-154)||(21416320-21416423)
chr7 (63-189)||(23568903-23569029)
chr7 (50-154)||(27597859-27597964)
[»] chr6 (2 HSPs)
chr6 (53-147)||(7301482-7301576)
chr6 (7-105)||(11637857-11637955)
[»] chr4 (7 HSPs)
chr4 (50-176)||(11197080-11197205)
chr4 (8-105)||(34946248-34946345)
chr4 (29-99)||(10396346-10396416)
chr4 (50-137)||(47680804-47680891)
chr4 (8-94)||(2917277-2917363)
chr4 (50-147)||(12718008-12718104)
chr4 (64-154)||(11307480-11307570)
[»] chr8 (2 HSPs)
chr8 (66-154)||(3671046-3671133)
chr8 (54-137)||(5981626-5981708)
[»] chr3 (3 HSPs)
chr3 (29-105)||(16143362-16143438)
chr3 (50-93)||(16869693-16869736)
chr3 (50-95)||(40196000-40196045)
[»] chr2 (4 HSPs)
chr2 (25-99)||(11727800-11727874)
chr2 (50-154)||(35414321-35414424)
chr2 (50-104)||(44981941-44981996)
chr2 (50-140)||(40053342-40053431)
[»] chr5 (2 HSPs)
chr5 (33-95)||(41341389-41341451)
chr5 (50-94)||(14168868-14168912)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 47159126 - 47159333
Alignment:
Q  15 atcagttacgcttaatttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcga 114  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47159126 atcacttacgattaatttccaacaatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcga 47159225  T
Q  115 gcctaaacaggactctgataccaatttgttgggaagtctgagaatcgttgtgagcggcaatgaactaaacgtctatgatttgttaagagagacaccacac 214  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||| ||||||||||||||||||||    
T  47159226 gcctaaccaggactctgataccaatttgttgggaagtctgagaatcgttgtgagcggcaatgagctaaatgtttaggatctgttaagagagacaccacac 47159325  T
Q  215 tcttaccc 222  Q
    ||||||||    
T  47159326 tcttaccc 47159333  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 34666002 - 34666162
Alignment:
Q  64 cacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaagtctgagaatcgtt 163  Q
    |||||||||||  ||||||||||||||||||| ||| |||   | || ||||||||| |||||||||||||||| ||||||||| ||||| ||||  | |    
T  34666002 cacatcactagtgtgatccacactaggatcccgctcccaccaccccagcgagcctaaccaggactctgataccagtttgttggggagtctcagaagtgct 34666101  T
Q  164 gtgagcggcaatgaactaaacgtctatgatttgttaagag--agacaccacactcttaccc 222  Q
    ||||| ||||||| | |||||||| | ||   ||||||||  |||||||||||| ||||||    
T  34666102 gtgaggggcaatggagtaaacgtccaagacccgttaagagaaagacaccacacttttaccc 34666162  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 31973493 - 31973611
Alignment:
Q  29 atttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggact 128  Q
    |||||||| ||||| ||  | ||||||||||||  |||||||||||  ||||||||||||||||||| ||| |||||   |||||||||||| || | ||    
T  31973493 atttccaacaatctccccctcaagtgtgactcactcacatcactagtctgatccacactaggatcccgctcccactcctccatcgagcctaaccaaggct 31973592  T
Q  129 ctgataccaatttgttggg 147  Q
     ||||||||||||||||||    
T  31973593 ttgataccaatttgttggg 31973611  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 43834474 - 43834387
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgatacca 137  Q
    |||||||| |||  |||||||||||  ||||||||||||||||||||||  | ||| | ||||| |||||| ||||  ||||||||||    
T  43834474 aagtgtgagtcactcacatcactagcctgatccacactaggatcccacttccgctcccccatcgggcctaaccagggttctgatacca 43834387  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 4753119 - 4753203
Alignment:
Q  66 catcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaagt 151  Q
    ||||| ||| |||||||| ||||||||||||||| |  |||| ||  |||||||| |||||| |||||||| | ||||||||||||    
T  4753119 catcattagcatgatccatactaggatcccactcccgatctcccactgagcctaatcaggaccctgatacc-agttgttgggaagt 4753203  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 21416320 - 21416423
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaa 149  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||| | || | |||||||  ||| ||||||||||||||||||||| |    
T  21416320 aagtgtgactcacccacatcactaggatgatccacactaggatcccgctcccactcccccagcaagcctaactagg-ctctgataccaatttgttgggga 21416418  T
Q  150 gtctg 154  Q
    |||||    
T  21416419 gtctg 21416423  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 23568903 - 23569029
Alignment:
Q  63 ccacatcactaggatgatccacactaggatcccactcacactctctcatc-gagcctaaacaggactctgataccaatttgttgggaagtctgagaatcg 161  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| | || |  ||||||| |||| || |||||||| ||||||||| |||||| | | |     
T  23568903 ccacatcactaggatgatccacactaggatcctgctcccactcccccagcaaagcctaaccagg-ctatgataccagtttgttggggagtctggggagca 23569001  T
Q  162 ttgtgagcggcaatgaactaaacgtcta 189  Q
    |||  ||||||||||| |||||||||||    
T  23569002 ttggtagcggcaatgagctaaacgtcta 23569029  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 27597964 - 27597859
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggat--cccactcacactctctcatcgagcctaaacaggactctgataccaatttgttggg 147  Q
    |||||||||||| |||||||||||||||||||||||||||| |  ||| ||| ||||| | || | ||||||| |||| ||||||||||| ||| |||||    
T  27597964 aagtgtgactcacccacatcactaggatgatccacactagggtcccccgctcccactcccccagcaagcctaatcagg-ctctgataccagtttattggg 27597866  T
Q  148 aagtctg 154  Q
     ||||||    
T  27597865 gagtctg 27597859  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 7301482 - 7301576
Alignment:
Q  53 tgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttggg 147  Q
    ||||||||| ||||||||||||  ||||||||| ||||||||| ||| ||||| | |||||||||||| || | ||||||||| | |||||||||    
T  7301482 tgtgactcacccacatcactagcctgatccacattaggatcccgctcccactcccccatcgagcctaaccatggctctgatactagtttgttggg 7301576  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 11637857 - 11637955
Alignment:
Q  7 tggacatcatcagttacgcttaatttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactc 105  Q
    ||||||| |||| | || ||| |||| ||| ||||||||  | |||||||||||| |||||| ||||| ||||||||||  |||||||||||| |||||    
T  11637857 tggacattatcactcacacttgattttcaacaatcttcccctcaagtgtgactcaaccacatgactagaatgatccacataaggatcccactctcactc 11637955  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 11197205 - 11197080
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaa 149  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||| ||| ||||| | || | |||||||  ||| ||||||||||| |||||| || |    
T  11197205 aagtgttactcacccacatcactaggatgatccacaccaggatcccgctcccactcccccagcaagcctaactagg-ctctgataccagtttgtttggga 11197107  T
Q  150 gtctgagaatcgttgtgagcggcaatg 176  Q
    ||||| | | ||||  |||||||||||    
T  11197106 gtctggggagcgtttggagcggcaatg 11197080  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 34946248 - 34946345
Alignment:
Q  8 ggacatcatcagttacgcttaatttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactc 105  Q
    |||||| |||| | || ||| |||||||| ||||| ||| | |||||||||||| ||||||||||||||||||||| |||| ||||||| || |||||    
T  34946248 ggacattatcactcacacttgatttccaacaatctccctctcaagtgtgactcacccacatcactaggatgatccaaactatgatcccagtcccactc 34946345  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 10396416 - 10396346
Alignment:
Q  29 atttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactc 99  Q
    |||||||| ||||| ||  | |||| ||||||  |||||||||||||||||||||||||||||||||||||    
T  10396416 atttccaacaatctccccctcaagtatgactcgcccacatcactaggatgatccacactaggatcccactc 10396346  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 137
Target Start/End: Complemental strand, 47680891 - 47680804
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgatacca 137  Q
    |||||||| ||| ||||||||||||  |||||| |||||||||||||||| | ||| | ||  |||||||| |||| |||||||||||    
T  47680891 aagtgtgagtcacccacatcactagcctgatcctcactaggatcccactcccgctcccccactgagcctaaccagggctctgatacca 47680804  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 2917277 - 2917363
Alignment:
Q  8 ggacatcatcagttacgcttaatttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcc 94  Q
    |||||| |||| | ||| || |||||||| ||||||||  | |||||||||||| ||||||||||||| | ||||||||| ||||||    
T  2917277 ggacattatcactcacgattgatttccaacaatcttcccctcaagtgtgactcacccacatcactaggctaatccacacttggatcc 2917363  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 12718008 - 12718104
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttggg 147  Q
    |||||||||| | ||||||||||||||||||||| ||||||||||  ||| ||||| | || | |||||||  ||| |||| |||||||||| |||||    
T  12718008 aagtgtgactaacccacatcactaggatgatccatactaggatcctgctcccactcccccagcaagcctaactagg-ctctaataccaatttattggg 12718104  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 11307480 - 11307570
Alignment:
Q  64 cacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaagtctg 154  Q
    |||||||||||  ||||||||||||||| ||||||| | | | | |||| ||||||| |||  || |||||||| ||||||||| ||||||    
T  11307480 cacatcactagcctgatccacactaggaacccactcccgcacccccatcaagcctaaccagagctatgataccagtttgttggggagtctg 11307570  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 3671046 - 3671133
Alignment:
Q  66 catcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaagtctg 154  Q
    ||||||||||| |||||||||||||||||| ||| ||||| | || | ||||||  || ||||||||||||||||||||||| ||||||    
T  3671046 catcactaggacgatccacactaggatcccgctcccactcccccagcaagcctagcca-gactctgataccaatttgttggggagtctg 3671133  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 5981626 - 5981708
Alignment:
Q  54 gtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgatacca 137  Q
    |||| ||| ||||||||||||  ||||||||||||||||||| ||| ||||| | || ||||||||| ||||  ||||||||||    
T  5981626 gtgagtcacccacatcactagcctgatccacactaggatcccgctcccactc-cccaccgagcctaaccagggttctgatacca 5981708  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 16143438 - 16143362
Alignment:
Q  29 atttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactc 105  Q
    |||||||| ||||| ||  | |||||||||||| ||||||||||||||||||||||||||| ||||| ||| |||||    
T  16143438 atttccaacaatctccccctcaagtgtgactcacccacatcactaggatgatccacactagaatcccgctcccactc 16143362  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 16869693 - 16869736
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatc 93  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||    
T  16869693 aagtgtgaatcacccacatcactagcatgatccacactaggatc 16869736  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 40196000 - 40196045
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatccc 95  Q
    |||||||| ||| ||||||||||||  |||||||||||||||||||    
T  40196000 aagtgtgagtcacccacatcactagcctgatccacactaggatccc 40196045  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 11727800 - 11727874
Alignment:
Q  25 cttaatttccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatcccactc 99  Q
    |||||||| ||||||||| ||| |  ||||||| ||| ||||||||||||  |||||||||||||||||||||||    
T  11727800 cttaattttcaataatctccctctcgagtgtgagtcacccacatcactagtctgatccacactaggatcccactc 11727874  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 35414321 - 35414424
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatttgttgggaa 149  Q
    |||||||||||||||| | ||||| || | ||||||||||||||||  |||||||| || | | ||||| |||| |||||||||||||| || ||||| |    
T  35414321 aagtgtgactcatccaaaccactaagacggtccacactaggatcccgttcacactcccttagcaagcct-aacaagactctgataccaaattattgggga 35414419  T
Q  150 gtctg 154  Q
    |||||    
T  35414420 gtctg 35414424  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 44981941 - 44981996
Alignment:
Q  50 aagtgtgactcatccacatcactaggat-gatccacactaggatcccactcacact 104  Q
    |||||||| ||| ||||||||||||  | |||||||||||||||||||||||||||    
T  44981941 aagtgtgagtcacccacatcactagccttgatccacactaggatcccactcacact 44981996  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 40053431 - 40053342
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcccactcacactctctcatcgagcctaaacaggactctgataccaatt 140  Q
    |||||||| ||| ||||||||||||  |||||||  |||||||||||||  | ||| | ||||||||||||  ||| ||||||||||||||    
T  40053431 aagtgtgagtcacccacatcactagcctgatccaggctaggatcccacttccgctc-cccatcgagcctaatgagggctctgataccaatt 40053342  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 41341451 - 41341389
Alignment:
Q  33 ccaataatcttccttttaagtgtgactcatccacatcactaggatgatccacactaggatccc 95  Q
    |||||||||| ||  | |||||||| ||| ||||||||||||  |||||||||||||||||||    
T  41341451 ccaataatctccccctcaagtgtgaatcacccacatcactagcctgatccacactaggatccc 41341389  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 14168912 - 14168868
Alignment:
Q  50 aagtgtgactcatccacatcactaggatgatccacactaggatcc 94  Q
    |||| ||| |||||||||||||||| |||||||||||||| ||||    
T  14168912 aagtatgaatcatccacatcactagcatgatccacactagaatcc 14168868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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