View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_high_2 (Length: 528)
Name: NF13233_high_2
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 270 - 507
Target Start/End: Complemental strand, 29421330 - 29421096
Alignment:
| Q |
270 |
aggggcttggaggtgttctctcatcatgagcaaggatgcctttggtattagacgtgtctcatgtctgacatgtgtcaattgactagcgccaacttaaatt |
369 |
Q |
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| T |
29421330 |
aggggcttggaggtgttctctcat---gagcaaggacgcctttggtattaggcgtgtctcatgtctgacatgtgtcaattgactagcgccaacttaaatt |
29421234 |
T |
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| Q |
370 |
gaaatacgaagatctcaattcaaataatcatgtacacttcctaagtagattgaattcacgtaccataaaaccaatgtatttacgtcaaatatttttaaaa |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
29421233 |
gaaatacgaagatctcaattcaaataatcatgtacacttcctaagtagattgaattcacgtaccataaaaccaatgtatatacgtgaaatatttttaaaa |
29421134 |
T |
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| Q |
470 |
aacacttactaagtcgcaggcctaggaaaaaggaaaaa |
507 |
Q |
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| T |
29421133 |
aacacttactaagtcgcaggcctaggaaaaaggaaaaa |
29421096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 29421459 - 29421328
Alignment:
| Q |
29 |
tatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaaggaaatcaagacagcttcaaacagctagccatcaacaca |
128 |
Q |
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| T |
29421459 |
tatatattatagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaagggaaccaagacagcttcaaacagctagccatcaacaca |
29421360 |
T |
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| Q |
129 |
aaaaattcaagtttcaacaaatgcataaaagg |
160 |
Q |
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| T |
29421359 |
aaaaattcaagtttcaacaaatgcataaaagg |
29421328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 29457327 - 29457141
Alignment:
| Q |
87 |
aaaggaaatcaagacagcttcaaacagctagccatcaacacaaaaaattcaagtttcaacaaatgcataaaaggtgttggtcgttgtagataatatcatt |
186 |
Q |
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| T |
29457327 |
aaagggaatcaagacatgttccaacagctagccatcagcacaaaagatccaagtttcaaataatgcataaaaggtgttggtcattgtagataatatcatt |
29457228 |
T |
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| Q |
187 |
atcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttcgatatgaattcttaggg |
273 |
Q |
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| T |
29457227 |
atcttaggagttcacttttattaagaatttgaattatagatctatgattagatttgaattacaatccgttgatatgaattcttaggg |
29457141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 29419015 - 29418901
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttc |
256 |
Q |
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| T |
29419015 |
aaggtgttggccattgtagattatatcattatcttaggagttatcttttattaggaatttgaattatagatttataactagagctgaattacaattcatt |
29418916 |
T |
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| Q |
257 |
gatatgaattcttag |
271 |
Q |
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||||| ||||||||| |
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| T |
29418915 |
gatataaattcttag |
29418901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 29457467 - 29457415
Alignment:
| Q |
37 |
atagaggaaaaagtattggcaaagacctaataagttaatcttcaaatttaaaa |
89 |
Q |
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| T |
29457467 |
atagaggaaaaagtattggcaaagtcgtaagaagttaagtttccaatttaaaa |
29457415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 24337752 - 24337638
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaattcttc |
256 |
Q |
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||||||||| || |||||||| |||| ||||||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||| ||||||||| | | |
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| T |
24337752 |
aaggtgttgctcattgtagattatataattatcttaagagttatctttaattagcaatttgaattatagatctacaatcagatctgaattacaatccatt |
24337653 |
T |
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| Q |
257 |
gatatgaattcttag |
271 |
Q |
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| T |
24337652 |
gatattaattcttag |
24337638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 24412345 - 24412251
Alignment:
| Q |
157 |
aaggtgttggtcgttgtagataatatcattatcttaggagttctcttttattaagaatttgaattatagatctatgatcagatctaaattacaat |
251 |
Q |
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||||||||| || |||||||| |||| |||||| || ||||| ||||| |||| |||||||||||||||||||| ||||||||| |||| |||| |
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| T |
24412345 |
aaggtgttgctcattgtagattatataattatcataagagttatctttaattagcaatttgaattatagatctataatcagatctcaattgcaat |
24412251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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