View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_high_4 (Length: 469)
Name: NF13233_high_4
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 107 - 250
Target Start/End: Complemental strand, 4096183 - 4096042
Alignment:
| Q |
107 |
ttgaaaagataaatgtttgagcaacatatggaaataggaaatacaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacag |
206 |
Q |
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| T |
4096183 |
ttgaaaagatagatgtttgagcaacatatggaaataggaaatagaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacag |
4096084 |
T |
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| Q |
207 |
tgactgcatatcaaaagaaaagaagaaggtgtcaataaagacat |
250 |
Q |
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| T |
4096083 |
tgactgcata--atatcaaaagaagaaggtgtcaataaagacat |
4096042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 4097340 - 4097261
Alignment:
| Q |
5 |
ggtagattatactcctttaacaactctggtaatggcttctgcatttttcctgcaaagtgatataattaagttcccttcaa |
84 |
Q |
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| T |
4097340 |
ggtagatcatactcctttaacaactctggtaatggcttctgcatttttcctgcaaagtgatataattaagttcccttcaa |
4097261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 4095774 - 4095708
Alignment:
| Q |
352 |
ataaatgttcctctaaagtacaagtttacggtcctactcgtcattatgtctaagatggtgacctaatt |
419 |
Q |
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| T |
4095774 |
ataaatgttcctctaaagtacaagtttacg-tcctactcgtcattatgtctaagatggtgacctaatt |
4095708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 4095652 - 4095621
Alignment:
| Q |
420 |
acatattcatttttccttgcttttattgaact |
451 |
Q |
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| T |
4095652 |
acatattcatttttccttgcttttattgaact |
4095621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 25797168 - 25797235
Alignment:
| Q |
144 |
gaaatacaaaccttttactttgttgaccaaccatttggttccgccttcaatactgttggacagtgact |
211 |
Q |
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| T |
25797168 |
gaaatacaaaccttttaatttgttgacgagccatttggttcctccttcaatgctgcttgacagtgact |
25797235 |
T |
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