View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13233_high_7 (Length: 398)
Name: NF13233_high_7
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 41853707 - 41854086
Alignment:
| Q |
1 |
tatggatgtgcggtttctcttgtttttcttgtgacttatatggctcaatggcattgtttccctgagaacatgtatgctttcctctataagttatgtcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853707 |
tatggatgtgcggtttctcttgtttttcttgtgacttatatggctcaatggcattgtttccctgagaacatgtatgctttcctctataagttatgtcaaa |
41853806 |
T |
|
| Q |
101 |
tattgtcggatcttcatctgatctctgcacttgcttcgtcgcccagcagtcctgtgtgttgcggaaggtgcaccgatagtaacttctgcaaatgtcataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853807 |
tattgtcggatcttcatctgatctctgcacttgcttcgtcgcccagcagtcctgtgtgttgcggaaggtgcaccgatagtaacttctgcaaatgtcataa |
41853906 |
T |
|
| Q |
201 |
tgggttgttaatgagatgacatcacaggtaaatgcaatttatacataattcaagaattcttatggttttttcttaagcatgatattagaattcctctcac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853907 |
tgggttgttaatgagatgacatcacaggtaaatgcaatttatacataattcaagaattcttatggttttttcttaagcatgatattagaattcctctcac |
41854006 |
T |
|
| Q |
301 |
cttggatgtttggtgccaaggatatctttctgaccatattttctccagttgtagccatcttcatttggtccttcaaggct |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41854007 |
cttggatgtttggtgccaaggatatctttctgaccatattttctccagttgtagccatcttcatttggtccttcaaggct |
41854086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 347
Target Start/End: Original strand, 41261569 - 41261617
Alignment:
| Q |
299 |
accttggatgtttggtgccaaggatatctttctgaccatattttctcca |
347 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
41261569 |
accttggatgcatggctccaaggatgtctttctgaccatattttctcca |
41261617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University