View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_low_11 (Length: 345)
Name: NF13233_low_11
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 52477376 - 52477691
Alignment:
| Q |
16 |
tttactttaaattacaaacgtgtttcctattttaactttgttttctgttgtcaactatttgtatggaagacaacttcattgtttagttttgaatatagtg |
115 |
Q |
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| T |
52477376 |
tttactttaaattacaaacgtgtttcctattttaactttgttttctgttgtcaactatttgtatggaagacaacttcattgtttagtttttaatatagtg |
52477475 |
T |
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| Q |
116 |
aaaaactgaaagtgttttctgaaatcaaagtttgcaagatcagagaagtgtcttgcgttttgttttgaagatgcaattgtgactagaagtgataaggaac |
215 |
Q |
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| T |
52477476 |
aaaaactgaaagtgttttctgaaatcaaagtttgcaagatcagagaagtgtcttgcgttttgttttgaagatgcaattgtgactagaagtgataaggaac |
52477575 |
T |
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| Q |
216 |
ataagttccaaggacaaaaccagcatgagagtcagagtcaaaaataaatcaagtgaaataacggatttggttaccggaggcggcgaagtcggacaaattc |
315 |
Q |
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| T |
52477576 |
ataagttccaaggacaaaaccagcatgagagtc--agtcaaaaataaatcaagtgaaataacggatttggttaccggaggcggcgaagtcggacaaattc |
52477673 |
T |
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| Q |
316 |
atagacacctttgctact |
333 |
Q |
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||||||||||||| |||| |
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| T |
52477674 |
atagacacctttggtact |
52477691 |
T |
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