View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_low_15 (Length: 224)
Name: NF13233_low_15
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 40456305 - 40456492
Alignment:
| Q |
20 |
cacatctcttttatgtttaagcaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccatttt-cttccattatgtgtagactgtgg |
118 |
Q |
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| T |
40456305 |
cacatcacttttatgtttaagcaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccatttttcttccattatgtgtagactgcgg |
40456404 |
T |
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| Q |
119 |
ggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagattttttattgcttaagggaaaaacaacacgatgacttttt |
206 |
Q |
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| T |
40456405 |
ggaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagattttttattgcttaagggaaaaacaacacgatgacttttt |
40456492 |
T |
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Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 56392334 - 56392520
Alignment:
| Q |
20 |
cacatctcttttatgtttaagcaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccattttcttccattatgtgtagactgtggg |
119 |
Q |
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| T |
56392334 |
cacatcacttttatgttttaacaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccattttttcccattatgcgtagattgtggg |
56392433 |
T |
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| Q |
120 |
gaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagattttttattgcttaagggaaaaacaacacgatgacttttt |
206 |
Q |
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| T |
56392434 |
gcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcagtttttttattggttaaaggataaacagcacgatggcttttt |
56392520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 27516575 - 27516761
Alignment:
| Q |
20 |
cacatctcttttatgtttaagcaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccattttcttccattatgtgtagactgtggg |
119 |
Q |
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|||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||| |
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| T |
27516575 |
cacatcacttttatgttttaacaaatatacccaagttacccgagtacaatcatcaacaaaactgataaaccattttttcccattatgcgtagattgtggg |
27516674 |
T |
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| Q |
120 |
gaagggccccaaacatctgtgtgtactaatgaaaaaggaaaaacagattttttattgcttaagggaaaaacaacacgatgacttttt |
206 |
Q |
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| T |
27516675 |
gcagggccccaaacatcagtatgtactaacgaaaaaggaaaatcagtttttttattgattaaaggataaacaaaacgatggcttttt |
27516761 |
T |
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