View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_low_3 (Length: 474)
Name: NF13233_low_3
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 2 - 474
Target Start/End: Complemental strand, 47159147 - 47158675
Alignment:
| Q |
2 |
ttggaaattaagcgtaactgattatgtctcacatcgactgaaaattgaagaaacgtttgatacataaaagaggagaatgttgaaaatatgtgggtaagaa |
101 |
Q |
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| T |
47159147 |
ttggaaattaatcgtaagtgattatatctcacatcgactggaaattgaagaaacgtttgatacataaaagaggagaatattggaaatgtatgggtaagaa |
47159048 |
T |
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| Q |
102 |
tgtgacgcctttcttttaataaatcctaaacacttagcttgttaccgctcggaacgttcccgacactcctcaacactagtactagtattttcctctagta |
201 |
Q |
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| T |
47159047 |
tgtgacgcctctcttttaataaatcctaaacacttagcttgttaccgctcggagcgctcccgacactcctcaacaccagtactagtattttgctctagta |
47158948 |
T |
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| Q |
202 |
aaaagcctccttagaattgcaaaatatattccaaccgactcaaatcaataaatcaaaagcaaaattggtggtgccacgtgtatttttaagtaacagggag |
301 |
Q |
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| T |
47158947 |
aaaagcctccttagaattgcaaaatatattccaaccgactcaaatcaataaatcaaaagcaaaattggtggtgccatgtgtatttttaagtaacaggggg |
47158848 |
T |
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| Q |
302 |
tagttgtgatttaattaatggaaagcgttaagtttgttgctttaataattggacatcgtcccaattgaaaacgaacacagtcatgaagaagtacgtgatg |
401 |
Q |
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| T |
47158847 |
tagttgtgatttaattaatggaaagcgttaagtttgttgctttaataattggacatcgtcccaattgaacacgaacacagtcatgaagaagtacgtgatg |
47158748 |
T |
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| Q |
402 |
tttcaaaatctttcaactgactcacgataatatttttattttgcctctaaaagaagctagtagtataatattt |
474 |
Q |
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| T |
47158747 |
tttcaaaatctttcaactgactcaagataatatttttattttgcctctaaaagaagctagtagtataatattt |
47158675 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 35448762 - 35448705
Alignment:
| Q |
20 |
tgattatgtctcacatcgactgaaaattgaagaaacgtttgatacataaaagaggaga |
77 |
Q |
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| T |
35448762 |
tgattatgtctcacatcgactagaaatagaggaaacgtttgatatataagagaggaga |
35448705 |
T |
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