View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13233_low_8 (Length: 391)
Name: NF13233_low_8
Description: NF13233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13233_low_8 |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40455940 - 40456311
Alignment:
| Q |
1 |
aaatgaacaatagggggtagaacatgatgatcagacaatacatcaagaggtcttctaaagttatgaacactagaaggggtctgattaatcaaataaactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40455940 |
aaatgaacaatagggggtagaacatgatgatcagacaatacatctagaggtcttctaaagttatgaacactagaaggggtccgattaatcaaataaactg |
40456039 |
T |
|
| Q |
101 |
cagagttgacagcctcaccccataaatgagatggaatgttaccatctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagccac |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456040 |
caaagttgacagcctcaccccataaatgagatggaatgttaccatctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagccac |
40456139 |
T |
|
| Q |
201 |
tccattttgttgaggtgaatatggacatgtagtttgatgcaaaatgcctttagagtttaaaaactttgttaattcggttttaaaatattcccctccattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456140 |
tccattttgttgaggtgaatatggacatgtagtttgatgcaaaatgcctttagagtttaaaaactttgttaattcggttttaaaatattcccctccattg |
40456239 |
T |
|
| Q |
301 |
tctgatctaatgacctttatgcatatgttaaattgtgtttctatcatctgataaaaagaacgaaacacatca |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40456240 |
tctgatctaatgacctttatgcatatgttaaattgtgtttctatcatctgataaaaagaacgaaacacatca |
40456311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 29495441 - 29495490
Alignment:
| Q |
166 |
acctctaataaatgtctatttttcctctcagccactccattttgttgagg |
215 |
Q |
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| T |
29495441 |
acctccaataaatgcctattttttctttcagcaactccattttgttgagg |
29495490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 183; Significance: 7e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 27516201 - 27516591
Alignment:
| Q |
1 |
aaatgaacaatagggggtagaacatgatgatcagacaatacatcaagaggtcttctaaagttatgaacactagaaggggtctgattaatcaaataaactg |
100 |
Q |
| |
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||||||||||| | || |||||| ||||||||| || ||||| |||||||||||||||||| | |||||||||||||| |||||||||| |||| | |
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| T |
27516201 |
aaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaagttaagcacactagaaggggttcgattaatcaagtaaaagg |
27516300 |
T |
|
| Q |
101 |
cagagttgacagcctcaccccataaatgagatggaatgttaccatctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagccac |
200 |
Q |
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||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||||||||| |
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| T |
27516301 |
cagagttaacagcctcaccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcagccac |
27516400 |
T |
|
| Q |
201 |
tccattttgttgaggtgaatatggacatgtagtttgatgcaaaatgcctttagagtttaaaaactttgttaattcggttttaaaatattcccctccattg |
300 |
Q |
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|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||| ||||||| |
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| T |
27516401 |
tccattttgttggggtgagtaaggacatgtagtttgatgcaaaatgcctttagagttcatgaactccattaattcctttttaaaatattcccttccattg |
27516500 |
T |
|
| Q |
301 |
tctgatctaatgacctttatgcatatgttaaattgtgtttctatcatctgataaaaagaacgaaacacatcaatcacatctcttttatgtt |
391 |
Q |
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|| |||||||| || ||||| ||| ||||||||||||| ||||||| |||| ||| || | |||||||||| |||||| |||||||||| |
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| T |
27516501 |
tcagatctaatcacttttatacatgtgttaaattgtgtaactatcatttgatgaaaggagcaaaacacatcatacacatcacttttatgtt |
27516591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 6857120 - 6857169
Alignment:
| Q |
166 |
acctctaataaatgtctatttttcctctcagccactccattttgttgagg |
215 |
Q |
| |
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||||| |||||||| |||||||| || ||||| ||||||||||||||||| |
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| T |
6857120 |
acctccaataaatgcctattttttctttcagcaactccattttgttgagg |
6857169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 6863330 - 6863379
Alignment:
| Q |
166 |
acctctaataaatgtctatttttcctctcagccactccattttgttgagg |
215 |
Q |
| |
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||||| |||||||| |||||||| || ||||| ||||||||||||||||| |
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| T |
6863330 |
acctccaataaatgcctattttttctttcagcaactccattttgttgagg |
6863379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 56391960 - 56392350
Alignment:
| Q |
1 |
aaatgaacaatagggggtagaacatgatgatcagacaatacatcaagaggtcttctaaagttatgaacactagaaggggtctgattaatcaaataaactg |
100 |
Q |
| |
|
||||||||||| | || |||||| ||||||||| || ||||| |||||||||||||||||| | |||||||||||||| |||||||||| |||| | |
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| T |
56391960 |
aaatgaacaatggaaggaagaacacaatgatcagataacacatctagaggtcttctaaagttaagcacactagaaggggttcgattaatcaagtaaatgg |
56392059 |
T |
|
| Q |
101 |
cagagttgacagcctcaccccataaatgagatggaatgttaccatctattaggagtgatcttgtcacctctaataaatgtctatttttcctctcagccac |
200 |
Q |
| |
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||||||| |||||||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||| |
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| T |
56392060 |
cagagtttacagcctcgccccacaaatgagatggaacattaccatctattaagagtgatcgtgtcacttctaatatgtgtctatttttcctctcggccac |
56392159 |
T |
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| Q |
201 |
tccattttgttgaggtgaatatggacatgtagtttgatgcaaaatgcctttagagtttaaaaactttgttaattcggttttaaaatattcccctccattg |
300 |
Q |
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|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||||| ||||||| |
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| T |
56392160 |
tccattttgttggggtgagtaaggacatgtagtttgatgcaaaatgcctttagagttcatgaactccattaattcctttttaaaatattcccttccattg |
56392259 |
T |
|
| Q |
301 |
tctgatctaatgacctttatgcatatgttaaattgtgtttctatcatctgataaaaagaacgaaacacatcaatcacatctcttttatgtt |
391 |
Q |
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|| |||||||| || ||||| ||| ||||||||||||| ||||||| |||| ||| || | |||||||||| |||||| |||||||||| |
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| T |
56392260 |
tcagatctaatcacttttatacatgtgttaaattgtgtaactatcatttgatgaaaggagcaaaacacatcatacacatcacttttatgtt |
56392350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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