View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13234_high_8 (Length: 399)
Name: NF13234_high_8
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13234_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 3308291 - 3307913
Alignment:
| Q |
18 |
ataggcatcgacctccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctccataaattcttttcctcatt |
117 |
Q |
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| T |
3308291 |
ataggcatcgacctccacttccatccaactaccctttgatccttaggtagtcccacaagttttcaagtttgattcttctccatgaattcttttcctcatt |
3308192 |
T |
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| Q |
118 |
cactttcttcttccgtgaactcctttcctcattcatttcatattgccatttctaattatccttgttctcgactgcttccttaaagatattcgattcctac |
217 |
Q |
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| T |
3308191 |
cactttcttcttccgtgaactcttttcctcattcatttcatattgccatttctaattatcattgttctcgactgcttccttaaagatattcgattcctac |
3308092 |
T |
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| Q |
218 |
ttgcatattttcaaccacacttagatcataacacacaaggtctttatagccataccactttggtgcaataattttcccattttctccatgatctcttgcc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3308091 |
ttgcatattttcaaccacacttagatcataacacacaaggtctttatagccataccactttggtgcaataattttcccattttctcc---atctcttgcc |
3307995 |
T |
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| Q |
318 |
aactgatagtcatgagccacagttggttgtcttactatggaacttgctggaggaatactatcctcatttccatacctggtct |
399 |
Q |
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| T |
3307994 |
aactgatagtcatgagccactgttggttgtcttactatagaacttgctggaggaatactatcctcatttccatacctggtct |
3307913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 16626852 - 16626784
Alignment:
| Q |
31 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
99 |
Q |
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| T |
16626852 |
tccacttgcatccaactaccctttggtgtttaggtagcttcacaagttttcaagtttggttcttttcca |
16626784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 99
Target Start/End: Original strand, 16257296 - 16257364
Alignment:
| Q |
31 |
tccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctcca |
99 |
Q |
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| T |
16257296 |
tccacttgcatccaactaccctttggtgtttaggtagctttacaagtttccaagtttggttcttttcca |
16257364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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