View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13234_high_9 (Length: 320)

Name: NF13234_high_9
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13234_high_9
NF13234_high_9
[»] chr5 (6 HSPs)
chr5 (13-302)||(625668-625966)
chr5 (83-176)||(16472645-16472749)
chr5 (78-128)||(1684898-1684948)
chr5 (137-176)||(16465547-16465586)
chr5 (78-141)||(16465593-16465656)
chr5 (25-62)||(16465686-16465723)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-210)||(189846-190030)
[»] chr1 (3 HSPs)
chr1 (24-205)||(50193443-50193617)
chr1 (137-210)||(10253507-10253581)
chr1 (265-302)||(36658846-36658883)
[»] chr3 (3 HSPs)
chr3 (83-210)||(7858527-7858653)
chr3 (139-201)||(36455028-36455090)
chr3 (83-128)||(33617636-33617681)
[»] chr4 (5 HSPs)
chr4 (137-201)||(7851111-7851176)
chr4 (85-210)||(52417711-52417846)
chr4 (105-205)||(12266164-12266270)
chr4 (81-141)||(27136780-27136841)
chr4 (24-76)||(50300732-50300784)
[»] chr6 (2 HSPs)
chr6 (137-176)||(3947471-3947510)
chr6 (81-141)||(2508795-2508856)
[»] chr2 (3 HSPs)
chr2 (137-182)||(37071710-37071756)
chr2 (17-62)||(12260878-12260923)
chr2 (22-62)||(34445994-34446034)
[»] chr7 (3 HSPs)
chr7 (28-132)||(37205945-37206048)
chr7 (24-63)||(37111444-37111483)
chr7 (18-58)||(19211249-19211289)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 625668 - 625966
Alignment:
Q  13 aatattgttagcaaggttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactcggactcgtagacccgtatgagtctacgaaaaattaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  625668 aatattgttagcaaggttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactcggactcgtagacccatatgagtctatgaaaaattaa 625767  T
Q  113 aattgacttttaaaaatatg-----------caagtgacatatatatttataatagaacaccaattaacat-aaaattaaaatttcaaactccataccaa 200  Q
    |||||||||| |||||||||            ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  625768 aattgactttgaaaaatatgtaagtgacacataagtgacatatatatttataatagaacaccacttaacataaaaattaaaatttcaaactccataccaa 625867  T
Q  201 acattttaacnnnnnnnnnnnnnnnnnctcatattaaagcaagc-aagtagaaaagtaagtagatcataaaacatatatgtgaatgtcttcaaacatcca 299  Q
    ||||||||||                 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  625868 acattttaac----aaaaaaaaaaaaactcatattagagcaagcaaagtagaaaagtaagtagatcataaaacatatatgtgaatgtcttcaaacatcca 625963  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 16472749 - 16472645
Alignment:
Q  83 gtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaatatgcaagtgaca-----------tatatatttataatagaacaccaattaaca 171  Q
    |||||| |||||||||||| | ||||||||| |||||||| ||||||||| ||||||||           ||||||||||||||||||||||||||||||    
T  16472749 gtagactcgtatgagtctatggaaaattaaagttgactttaaaaaatatgaaagtgacacataaatgatatatatatttataatagaacaccaattaaca 16472650  T
Q  172 taaaa 176  Q
    |||||    
T  16472649 taaaa 16472645  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 1684948 - 1684898
Alignment:
Q  78 gactcgtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaa 128  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||| |||||    
T  1684948 gactcgtagactcgtaagagtctatgaaaaattaaaattgactttaaaaaa 1684898  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 16465586 - 16465547
Alignment:
Q  137 tgacatatatatttataatagaacaccaattaacataaaa 176  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  16465586 tgacatatatatttatgatagaacaccaattatcataaaa 16465547  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 16465656 - 16465593
Alignment:
Q  78 gactcgtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaatatgcaagtgaca 141  Q
    |||| |||||| ||||||||| || |||||||||||||||||| | ||||||||  ||||||||    
T  16465656 gacttgtagactcgtatgagtttatgaaaaattaaaattgactgtaaaaaatattaaagtgaca 16465593  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 16465723 - 16465686
Alignment:
Q  25 aaggttgtcagactcgcgagtctacatagactcgaaaa 62  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  16465723 aaggttgtcagactcgcgagtttacatagcctcgaaaa 16465686  T

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Target: scaffold0007 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 189846 - 190030
Alignment:
Q  22 agcaaggttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactcggactcgtagacccgtatgagtctacgaaaaattaaaattgactt 121  Q
    |||||| |||| | |||| |||||||||||||||||||||||||||| |||  |  |||| |   || |  || |||||| |||||||||||||||||||    
T  189846 agcaagattgttaaactcacgagtctacatagactcgaaaaaggtttgtag--ttagacttg---actcaaataagtctatgaaaaattaaaattgactt 189940  T
Q  122 ttaaaaatatgcaagtgacatatatatttataatagaacaccaattaacat-aaaattaaaatttcaaactccataccaaacattttaac 210  Q
    | ||||||||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||| |||| |||  ||||||||    
T  189941 taaaaaatatgtaagtgacatatatgtttataatagaacacaaattaacataaaaattaaaatttcaaacttcataacaagaattttaac 190030  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 50193443 - 50193617
Alignment:
Q  24 caaggttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactcggactcgtagacccgtatgagtctacgaaaaattaaaattgactttt 123  Q
    |||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||         || | |||||| |||  ||| |||||||||||||||     
T  50193443 caagattgtcagactcgctagtctacatagactcgaaaaaagtttgtagactcg---------actcatatgagcctataaaatattaaaattgacttta 50193533  T
Q  124 aaaaat-atgcaagtgacatatatatttataatagaacaccaattaacat-aaaattaaaatttcaaactccataccaaacatt 205  Q
    |||||  ||| ||||||||||||||||| ||||||||||  ||||| ||| ||||||||||||||||||| |||| ||||||||    
T  50193534 aaaaaacatgtaagtgacatatatatttttaatagaacatgaattagcataaaaattaaaatttcaaactacataacaaacatt 50193617  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 10253507 - 10253581
Alignment:
Q  137 tgacatatatatttataatagaacaccaattaacataaa-attaaaatttcaaactccataccaaacattttaac 210  Q
    ||||||||||||| |||| |||||||||||| | || |  ||||||||||||||||||||| |||||||||||||    
T  10253507 tgacatatatattaataacagaacaccaattgatatgatgattaaaatttcaaactccatagcaaacattttaac 10253581  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 302
Target Start/End: Original strand, 36658846 - 36658883
Alignment:
Q  265 cataaaacatatatgtgaatgtcttcaaacatccaaag 302  Q
    |||||||||||||||  |||||||||||||||||||||    
T  36658846 cataaaacatatatgacaatgtcttcaaacatccaaag 36658883  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 7858653 - 7858527
Alignment:
Q  83 gtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaatatgcaagtgacatatatatttataatagaacaccaattaacataaaa-ttaaa 181  Q
    |||||| |||| ||||||| |||||||| |||| |||||| | ||| | |||||||||| ||||  |||||||||| ||||||||||| ||||| |||||    
T  7858653 gtagactcgtaggagtctatgaaaaatttaaatcgactttaagaaacaagcaagtgacacatat--ttataatagatcaccaattaacctaaaaattaaa 7858556  T
Q  182 atttcaaactccataccaaacattttaac 210  Q
    ||||||||||||||| ||||| |||||||    
T  7858555 atttcaaactccataacaaactttttaac 7858527  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 36455028 - 36455090
Alignment:
Q  139 acatatatatttataatagaacaccaattaacataaaattaaaatttcaaactccataccaaa 201  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||    
T  36455028 acatatatatttataatagaacaccaattaacataaaaattaaatttcaaactccataacaaa 36455090  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 33617681 - 33617636
Alignment:
Q  83 gtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaa 128  Q
    |||||| |||||||||||| | |||||||||| |||||||||||||    
T  33617681 gtagactcgtatgagtctatggaaaattaaaagtgacttttaaaaa 33617636  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 7851176 - 7851111
Alignment:
Q  137 tgacatatatatttataatagaacaccaattaacat-aaaattaaaatttcaaactccataccaaa 201  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  7851176 tgacatatttgtttataatagaacaccaattaacataaaaattaaaatttcaaactccataacaaa 7851111  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 52417711 - 52417846
Alignment:
Q  85 agacccgtatgagtctacgaaaaattaaaattgacttttaaaaatatgcaagtgacatata---------tatttataatagaacaccaattaacataaa 175  Q
    |||| ||||||||||||   |||||||||||||||||| |||||||| || |||||| |||         |||||| |||||||||||| |||| |||||    
T  52417711 agactcgtatgagtctatagaaaattaaaattgactttaaaaaatatacaggtgacagataaatgacatatatttacaatagaacaccagttaatataaa 52417810  T
Q  176 a-ttaaaatttcaaactccataccaaacattttaac 210  Q
    | |||||||||||||||||||| ||||| |||||||    
T  52417811 aattaaaatttcaaactccataacaaactttttaac 52417846  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 12266164 - 12266270
Alignment:
Q  105 aaaattaaaattgacttttaaaaatatgcaagtgacatatatat-----ttataatagaacaccaattaacat-aaaattaaaatttcaaactccatacc 198  Q
    |||||||||||||| ||| ||||||||  |||||||| ||| ||     |||||||||||||| ||||| ||| ||||| ||||||||||||| |||| |    
T  12266164 aaaattaaaattgattttaaaaaatatataagtgacacataaatgacatttataatagaacactaattagcataaaaatcaaaatttcaaacttcataac 12266263  T
Q  199 aaacatt 205  Q
    |||||||    
T  12266264 aaacatt 12266270  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 27136780 - 27136841
Alignment:
Q  81 tcgtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaat-atgcaagtgaca 141  Q
    ||||||||| ||||||||||| |||||||||||| ||||||| |||||| |||||| |||||    
T  27136780 tcgtagacctgtatgagtctatgaaaaattaaaaatgactttaaaaaatcatgcaattgaca 27136841  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 50300784 - 50300732
Alignment:
Q  24 caaggttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactc 76  Q
    ||||||||| | ||||| ||||||| | ||||||||||||||||| |||||||    
T  50300784 caaggttgttaaactcgtgagtctatacagactcgaaaaaggtttgtagactc 50300732  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 3947471 - 3947510
Alignment:
Q  137 tgacatatatatttataatagaacaccaattaacataaaa 176  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  3947471 tgacatatatatttataatagaacaccgattaacataaaa 3947510  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 2508856 - 2508795
Alignment:
Q  81 tcgtagacccgtatgagtctacgaaaaattaaaattgacttttaaaaat-atgcaagtgaca 141  Q
    ||||||||| ||||||||||| |||||||||||| ||||||| |||||| |||||| |||||    
T  2508856 tcgtagacctgtatgagtctatgaaaaattaaaaatgactttaaaaaatcatgcaattgaca 2508795  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 37071710 - 37071756
Alignment:
Q  137 tgacatatatatttataatag-aacaccaattaacataaaattaaaa 182  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||    
T  37071710 tgacatatatatttataatagaaacaccaattaacataaaaataaaa 37071756  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 12260878 - 12260923
Alignment:
Q  17 ttgttagcaaggttgtcagactcgcgagtctacatagactcgaaaa 62  Q
    |||| ||||||||||||||||||||| ||||||||| |||||||||    
T  12260878 ttgtaagcaaggttgtcagactcgcgggtctacataaactcgaaaa 12260923  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 34446034 - 34445994
Alignment:
Q  22 agcaaggttgtcagactcgcgagtctacatagactcgaaaa 62  Q
    |||||||||||||||||||||||||||||| ||| ||||||    
T  34446034 agcaaggttgtcagactcgcgagtctacatggacccgaaaa 34445994  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 37206048 - 37205945
Alignment:
Q  28 gttgtcagactcgcgagtctacatagactcgaaaaaggtttttagactcggactcgtagacccgtatgagtctacgaaaaattaaaattgacttttaaaa 127  Q
    |||||||||||| |||||||||| | ||||||||| ||| | |||||||  ||||||| || | ||||||| || ||||||  |||||||||||| |||     
T  37206048 gttgtcagactcacgagtctacacatactcgaaaatggtctgtagactc-aactcgtaaactcatatgagtatatgaaaaaacaaaattgactttaaaat 37205950  T
Q  128 atatg 132  Q
    |||||    
T  37205949 atatg 37205945  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 37111483 - 37111444
Alignment:
Q  24 caaggttgtcagactcgcgagtctacatagactcgaaaaa 63  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  37111483 caagattgttagactcgcgagtctacatagactcgaaaaa 37111444  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 19211289 - 19211249
Alignment:
Q  18 tgttagcaaggttgtcagactcgcgagtctacatagactcg 58  Q
    ||||||| |||||||||  ||||||||||||||||||||||    
T  19211289 tgttagcgaggttgtcaagctcgcgagtctacatagactcg 19211249  T

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