View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13234_low_1 (Length: 683)
Name: NF13234_low_1
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13234_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 662; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 39680109 - 39679436
Alignment:
| Q |
1 |
agcaaagcttcttcttgattcataactttagaccaagtagcactatctcttgctgtcatcttatcttgcaaagtttttgactgagtaaccaacttcctta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680109 |
agcaaagcttcttcttgattcataactttagaccaagtagcactatctcttgcggtcatcttatcttgcaaagtttttgactgagtaaccaacttcctta |
39680010 |
T |
|
| Q |
101 |
atttctccaaatcaggtgacatatgttttataacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39680009 |
atttctccaaatcaggtgacatatgttttataacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggcc |
39679910 |
T |
|
| Q |
201 |
ttgttcttgggccaacaaaccttgttcaccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679909 |
ttgttcttgggccaacaaaccttgttcaccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgt |
39679810 |
T |
|
| Q |
301 |
ggtggcacacaatgttgcattaaagcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679809 |
ggtggcacacaatgttgcattaaagcagaaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccatta |
39679710 |
T |
|
| Q |
401 |
tagtattaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcg |
500 |
Q |
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| T |
39679709 |
tagtattaaaatgttcgtcttctcgaaggagtggtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcg |
39679610 |
T |
|
| Q |
501 |
taaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtat |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39679609 |
taaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtat |
39679510 |
T |
|
| Q |
601 |
ttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgcacaggttc |
674 |
Q |
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| T |
39679509 |
ttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttgctcaggttc |
39679436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 38052655 - 38052315
Alignment:
| Q |
1 |
agcaaagcttcttcttgattcataactttagaccaagtagcactatctcttgctgtcatcttatcttgcaaagtttttgactgagtaaccaacttcctta |
100 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| |||||||| ||||||||| | ||||||||||||| ||||||||| ||||| ||||| || ||| | || | |
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| T |
38052655 |
agcaaagcttgttcttggttcattactttggaccaagttgcactatctttagctgtcatcttatgttgcaaagtctttgattgagtcactaaccttctca |
38052556 |
T |
|
| Q |
101 |
atttctccaaatcaggtgacatatgttttataacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggcc |
200 |
Q |
| |
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||| || | |||||| |||| ||||| || | ||||||| |||||||||||||| |||||||| | ||||| ||||| ||||||||||||||||| |
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| T |
38052555 |
ctttatcaacatcaggagacaagtgtttgatgattgcagccaacacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggcc |
38052456 |
T |
|
| Q |
201 |
ttgttcttgggccaacaaaccttgttcaccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgt |
300 |
Q |
| |
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|||| || | ||| |||||||| ||||||||| | ||||| ||| | |||||||| ||||||| | || | || || || || || || ||| |
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| T |
38052455 |
atgttgttctgacaaaccaccttgttgaccccaccactgttctgttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgt |
38052356 |
T |
|
| Q |
301 |
ggtggcacacaatgttgcattaaagcagaaagaagcgaacc |
341 |
Q |
| |
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||||| ||||| |||||||||| ||| |||||||| ||||| |
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| T |
38052355 |
ggtggtacacagtgttgcattagagctgaaagaagagaacc |
38052315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 484 - 665
Target Start/End: Complemental strand, 38052169 - 38051988
Alignment:
| Q |
484 |
tctttccaccattcgcgtaaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatcca |
583 |
Q |
| |
|
|||||||||||||| || || || || || ||||||| ||| ||||| || || || || | || |||||||||||||||| |||||||||| || |
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| T |
38052169 |
tctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaaccttgagctttgcatattgtca |
38052070 |
T |
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| Q |
584 |
tgatctttgccatgtatttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttg |
665 |
Q |
| |
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| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |
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| T |
38052069 |
taatcttcatcatgtatttgagaattgaatcttgtgctcttgacatctttttccttcttgatgcctcatcttttgcttgttg |
38051988 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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