View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13234_low_11 (Length: 318)

Name: NF13234_low_11
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13234_low_11
NF13234_low_11
[»] chr8 (6 HSPs)
chr8 (1-306)||(34866545-34866850)
chr8 (42-306)||(34389501-34389765)
chr8 (90-246)||(10551685-10551841)
chr8 (109-234)||(9519017-9519142)
chr8 (91-196)||(37987529-37987634)
chr8 (223-278)||(31210604-31210658)
[»] chr7 (6 HSPs)
chr7 (47-294)||(38305574-38305821)
chr7 (88-294)||(3420159-3420365)
chr7 (113-278)||(47326387-47326551)
chr7 (114-247)||(37792712-37792845)
chr7 (72-213)||(38484915-38485055)
chr7 (157-213)||(12480298-12480355)
[»] chr4 (8 HSPs)
chr4 (47-300)||(30963777-30964030)
chr4 (72-288)||(35799957-35800173)
chr4 (115-229)||(16501154-16501268)
chr4 (112-233)||(31051212-31051333)
chr4 (157-251)||(46699473-46699566)
chr4 (170-232)||(4305075-4305135)
chr4 (143-245)||(38929125-38929227)
chr4 (172-231)||(7702937-7702994)
[»] chr1 (6 HSPs)
chr1 (47-279)||(41919796-41920028)
chr1 (59-300)||(24685004-24685243)
chr1 (72-251)||(4651145-4651322)
chr1 (114-217)||(17032835-17032939)
chr1 (144-234)||(31586261-31586351)
chr1 (159-211)||(24450450-24450501)
[»] chr6 (4 HSPs)
chr6 (37-306)||(16510777-16511045)
chr6 (132-251)||(12793536-12793655)
chr6 (185-251)||(9223377-9223443)
chr6 (4-32)||(16511068-16511096)
[»] chr3 (6 HSPs)
chr3 (59-300)||(19175830-19176069)
chr3 (72-278)||(20611145-20611349)
chr3 (112-252)||(1653458-1653598)
chr3 (136-306)||(17501725-17501891)
chr3 (170-250)||(30935940-30936017)
chr3 (183-251)||(25595151-25595219)
[»] chr2 (7 HSPs)
chr2 (49-275)||(39339351-39339574)
chr2 (134-273)||(31902906-31903044)
chr2 (138-251)||(2062247-2062360)
chr2 (144-251)||(22886030-22886137)
chr2 (112-251)||(27739128-27739268)
chr2 (148-213)||(29486398-29486463)
chr2 (171-227)||(25505550-25505606)
[»] chr5 (3 HSPs)
chr5 (112-211)||(27712379-27712478)
chr5 (91-196)||(697664-697769)
chr5 (171-227)||(8730301-8730357)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 34866850 - 34866545
Alignment:
Q  1 ggtagtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34866850 ggtagtttaggttgtgtggtggtggtgatgtgagtaggttgcgggtagtgttgttcaaatccgccatttttgctccaccattgattctcttttactacgg 34866751  T
Q  101 tgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggat 200  Q
     ||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  34866750 cgacgaaaacattctccttgtcacaggcgaccgcctttttatgacctgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggat 34866651  T
Q  201 ttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtg 300  Q
    |||||||||||||| |||||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34866650 ttcgtcttcctctaaatttatgtttgtgttgttgcttgtttcttggtgaggatatttttgtggcgtagtgatgcagtgacggtggtggtgatgcgcggtg 34866551  T
Q  301 atgatg 306  Q
     |||||    
T  34866550 gtgatg 34866545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 42 - 306
Target Start/End: Complemental strand, 34389765 - 34389501
Alignment:
Q  42 cgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgccttttta 141  Q
    |||| |||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||| || | |    
T  34389765 cgggaagtgttattcagatctgccgtttttgctccaccattggttctcttttactacggcgacgaacacattctccttgtcacaggcagccgctttgtca 34389666  T
Q  142 tgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctcttt 241  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||| ||| | |||    
T  34389665 tgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgttt 34389566  T
Q  242 cttggtgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtgatgatg 306  Q
    |||||||||||| |||||| |||||||||||||| ||| ||||||||| ||| |||||| |||||    
T  34389565 cttggtgaggatgttttggcggcgtagtgatgcaatgatggtggtggtaatgtgcggtggtgatg 34389501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 10551685 - 10551841
Alignment:
Q  90 ttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttt 189  Q
    ||||||| ||||||| || |  ||||||||||||| | || | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||    
T  10551685 ttttactccggtgacaaatgtcttctccttgtcaccgacgacagcctttttatgatcggggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctt 10551784  T
Q  190 tgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 246  Q
    ||||||||| |||||||||||||||||| |||||||||||||||| || ||||||||    
T  10551785 tgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtctatttcttgg 10551841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 9519017 - 9519142
Alignment:
Q  109 gcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtctt 208  Q
    ||||||||||||||| ||| |||  | || |||  || ||||||||| | |||||||||| | |||||||| |||||||||||||||||| |||||||||    
T  9519017 gcattctccttgtcaaaggtggcaacattgttactatttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctt 9519116  T
Q  209 cctctagatttatgtttgtgttgctg 234  Q
     |||||||||| ||||||| ||||||    
T  9519117 tctctagatttgtgtttgtattgctg 9519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 37987634 - 37987529
Alignment:
Q  91 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 190  Q
    |||||| ||||| || |||| ||||||||||||| |||||  || | |||| ||||| ||||| | |||||||||| | |||||||||| |||||||| |    
T  37987634 tttacttcggtgccggaagccttctccttgtcaccggcgggtgcgtgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttat 37987535  T
Q  191 gttgtt 196  Q
    ||||||    
T  37987534 gttgtt 37987529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 31210658 - 31210604
Alignment:
Q  223 tttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtgatgcagtg 278  Q
    ||||||||||||||| ||||||||||| |||  ||||| |||||||||||||||||    
T  31210658 tttgtgttgctgcctgtttcttggtgacgat-gtttggcggcgtagtgatgcagtg 31210604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 47 - 294
Target Start/End: Original strand, 38305574 - 38305821
Alignment:
Q  47 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 146  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||  |||||     
T  38305574 agtgctgttcatatccgccgtttttgctccaccattggctctcttttactacggcgacgaacgcattctcgttgtcacagtcggccgcctttaaatgata 38305673  T
Q  147 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 246  Q
    |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||    
T  38305674 tgggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagattgatgtttgtgttgttgcttgtttcttgg 38305773  T
Q  247 tgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgc 294  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38305774 tgaggatgttttggtggcgtagtgatgcagtgacggtggtggtgatgc 38305821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 88 - 294
Target Start/End: Complemental strand, 3420365 - 3420159
Alignment:
Q  88 tcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgt 187  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||    
T  3420365 tcttttactacggcgacgaacgcattctccctgttacaggagaccgcctttttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgt 3420266  T
Q  188 tttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtgatgcagtgacggtggtg 287  Q
    ||||||||| | ||||||||||||||| |||||||  ||||||| ||| | ||||||||||||||| |||||| | ||||||||||||||||| ||||||    
T  3420265 tttgttgtttggtttcgtcttcctctaaatttatgcatgtgttgttgcttgtttcttggtgaggatgttttggcgacgtagtgatgcagtgacagtggtg 3420166  T
Q  288 gtgatgc 294  Q
    |||||||    
T  3420165 gtgatgc 3420159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 278
Target Start/End: Complemental strand, 47326551 - 47326387
Alignment:
Q  113 tctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctc 212  Q
    |||||||||||| ||||||||||||| |||||| | ||||||| || | ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  213 tagatttatgtttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtgatgcagtg 278  Q
    |||||  || ||||||||||||| | |||||||||||||||  ||||| |||||||||||||||||    
T  47326451 tagatcaatatttgtgttgctgcttgtttcttggtgaggat-gtttggcggcgtagtgatgcagtg 47326387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 37792712 - 37792845
Alignment:
Q  114 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 213  Q
    ||||||||||| ||||   ||||||||| ||| ||||||||| |||||||||||| |||||||| |  |||||||||| |||||| |||| |||| ||||    
T  37792712 ctccttgtcaccggcgattgcctttttacgatatgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctct 37792811  T
Q  214 agatttatgtttgtgttgctgcctctttcttggt 247  Q
     |||   |||||||||||||| || |||||||||    
T  37792812 tgatccgtgtttgtgttgctgtctgtttcttggt 37792845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 213
Target Start/End: Original strand, 38484915 - 38485055
Alignment:
Q  72 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 171  Q
    |||||||||||| |||| ||||||| ||| |||  | |  ||||||||||||| | ||||| |||||||| |||  |||||||| |||||||||||| ||    
T  38484915 gctccaccattgtttctattttactccggcgacagatgtcttctccttgtcactgacggccacctttttacgatg-gggttgtgtttccgcttcaaaccg 38485013  T
Q  172 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 213  Q
    |||||||| ||| |||||||||||  | ||||||||||||||    
T  38485014 gcgtcgctgcccatgttttgttgtcaggtttcgtcttcctct 38485055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 12480298 - 12480355
Alignment:
Q  157 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttc-gtcttcctct 213  Q
    |||| ||||||| |||||||||| | |||||||||||||||| |||| ||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct 12480355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 47 - 300
Target Start/End: Original strand, 30963777 - 30964030
Alignment:
Q  47 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 146  Q
    |||| |||||| ||||||||||||| ||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||| ||  ||||||||||||    
T  30963777 agtgctgttcagatccgccgttttttctccaccattggttctcttttactacaacgacgaacgcattctccttgtcacaggcgaccatctttttatgatc 30963876  T
Q  147 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 246  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||    
T  30963877 tgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtgttgttgcttgtttcttgg 30963976  T
Q  247 tgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtg 300  Q
    ||||||| |||||| |||||||| |   ||||||||||||||||||||||||||    
T  30963977 tgaggatgttttggaggcgtagttacatagtgacggtggtggtgatgcgcggtg 30964030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 288
Target Start/End: Original strand, 35799957 - 35800173
Alignment:
Q  72 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 171  Q
    |||||||||||| ||||||| |||| |||||||| | || |||||||||| || | || ||||||||||| | | |||||| || ||||| |||||||||    
T  35799957 gctccaccattggttctcttgtactccggtgacggacgccttctccttgttaccgacgaccgcctttttacgttatgggttatgtttccgtttcaaatcg 35800056  T
Q  172 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtga 271  Q
    |||||| | ||||||||||| |  | | |||||| || || ||||| | | ||||||||||||||| |||||||||| || | |||||| |||||||| |    
T  35800057 gcgtcgttgcccgtgttttgctaataggtttcgtttttctttagatatgtatttgtgttgctgcctgtttcttggtggggctgttttggcggcgtagtaa 35800156  T
Q  272 tgcagtgacggtggtgg 288  Q
    || ||||  ||||||||    
T  35800157 tgtagtggtggtggtgg 35800173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 16501154 - 16501268
Alignment:
Q  115 tccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctcta 214  Q
    |||||||||| |||||||| |||| || ||| ||||||||| |||| ||||||| |||||||||| ||| |||| ||||||||| ||| |||||||||||    
T  16501154 tccttgtcaccggcggccgtctttatacgatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctcta 16501253  T
Q  215 gatttatgtttgtgt 229  Q
     |||| |||||||||    
T  16501254 aatttgtgtttgtgt 16501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 31051333 - 31051212
Alignment:
Q  112 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 211  Q
    |||||||||| |  || ||||||||||||| ||| |||||||||  ||||||||| | |||||||||| |||||||||||||||||| || | |||||||    
T  31051333 ttctccttgttatcggtggccgcctttttacgatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcct 31051234  T
Q  212 ctagatttatgtttgtgttgct 233  Q
     ||||||| |||| ||||||||    
T  31051233 ttagatttgtgttggtgttgct 31051212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 46699566 - 46699473
Alignment:
Q  157 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 251  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| | ||| | |||||| |||| ||||| | |||||||||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcctattgatctgtgtttg-gttgatgcctgtgtcttggtgagg 46699473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 232
Target Start/End: Original strand, 4305075 - 4305135
Alignment:
Q  170 cggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgc 232  Q
    |||||||||| ||||||||||||||||||||||||||||   ||||||| |||||||| ||||    
T  4305075 cggcgtcgctgcccgtgttttgttgttggatttcgtctt--gctagattaatgtttgtcttgc 4305135  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 38929125 - 38929227
Alignment:
Q  143 gatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttc 242  Q
    ||||| ||||||| |||||||||| | ||||||| || |||||||||||||||| | | || ||||||| | ||||||  |||| |||| ||||| ||||    
T  38929125 gatctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgttagttatcatcttccttttgatttagctttgggttgttgcctgtttc 38929224  T
Q  243 ttg 245  Q
    |||    
T  38929225 ttg 38929227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 7702937 - 7702994
Alignment:
Q  172 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttg 231  Q
    |||||||| || |||||||||||||||||||||||||   ||||||| ||||||||||||    
T  7702937 gcgtcgctgcctgtgttttgttgttggatttcgtctt--gctagattgatgtttgtgttg 7702994  T

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Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 47 - 279
Target Start/End: Original strand, 41919796 - 41920028
Alignment:
Q  47 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 146  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||  ||||||||||||||||||| |||||| ||| ||||||    
T  41919796 agtgttgttcagatccgccgtttttgctccaccattggttctcttttactacggcaacgaacacattctccttgtcacaggctgccgccatttaatgatc 41919895  T
Q  147 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttgg 246  Q
    |||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| | ||||||||    
T  41919896 tgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagatttatgtttgtgttgttgcttgtttcttgg 41919995  T
Q  247 tgaggatattttggtggcgtagtgatgcagtga 279  Q
    ||||||| |||||| ||||||||||||||||||    
T  41919996 tgaggatgttttggcggcgtagtgatgcagtga 41920028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 59 - 300
Target Start/End: Complemental strand, 24685243 - 24685004
Alignment:
Q  59 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 158  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24685243 atccgccatttttgctccaccattggttct-ttttactacggcgacgaacacattctccttgtcacaggcggccagctttttatgatatgggttgtggtt 24685145  T
Q  159 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatatttt 258  Q
    | |||||||| |||||||||| ||||||||||||||||| |||| ||||  || ||||||||||||||||||| ||| | |||||||||||||||  |||    
T  24685144 ctgcttcaaaccggcgtcgctgcccgtgttttgttgttgaattttgtctctctttagatttatgtttgtgttgttgcttgtttcttggtgaggat-gttt 24685046  T
Q  259 ggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtg 300  Q
    || |||||||||||||||||||  ||||||||||||||||||    
T  24685045 ggcggcgtagtgatgcagtgacaatggtggtgatgcgcggtg 24685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 251
Target Start/End: Original strand, 4651145 - 4651322
Alignment:
Q  72 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 171  Q
    ||||||||||||||||||||||||| ||| |||  | |  |||||||| |||| | |||| |||||||||  ||| | |||||  |||||||||||| ||    
T  4651145 gctccaccattgattctcttttactccggcgacagatgtcttctccttatcactgacggctgcctttttacaatcggagttgt--ttccgcttcaaaccg 4651242  T
Q  172 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 251  Q
    | |||||| |  ||||||||||||| | |||||||||||||  ||| |||||||||||||||| || |||||||||||||    
T  4651243 gtgtcgctgcttgtgttttgttgttaggtttcgtcttcctcatgatctatgtttgtgttgctgtctgtttcttggtgagg 4651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 17032835 - 17032939
Alignment:
Q  114 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt-gttgttggatttcgtcttcctc 212  Q
    ||||||||||| ||||||| | ||||| ||||| |||||||| ||| |||||| | ||| ||| || || ||||||| ||||||||||||||||||||||    
T  17032835 ctccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctc 17032934  T
Q  213 tagat 217  Q
    |||||    
T  17032935 tagat 17032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 31586351 - 31586261
Alignment:
Q  144 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctg 234  Q
    |||||||| ||| | |||||||| | |||||||||| |||||||||||||||||| ||||||||| |||| ||||| |||  |||||||||    
T  31586351 atctgggtcgtgttcccgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctttctctggatttgtgtcagtgttgctg 31586261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 24450501 - 24450450
Alignment:
Q  159 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 211  Q
    |||||||||| | |||||||| |||||||||||||||||| |||| |||||||    
T  24450501 ccgcttcaaa-ctgcgtcgctgcccgtgttttgttgttgggtttcatcttcct 24450450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 37 - 306
Target Start/End: Complemental strand, 16511045 - 16510777
Alignment:
Q  37 ggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcct 136  Q
    |||| |||| |||| |||||| | ||||||||||||||||||||||| |||||||||||||||| || |||  |||||||||||||||| ||| | ||||    
T  16511045 ggttccgggaagtgctgttcagaaccgccgtttttgctccaccattgtttctcttttactacggagatgaacacattctccttgtcacaagcgactgcct 16510946  T
Q  137 ttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcc 236  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||     
T  16510945 ttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgttggatgtcgtcttcctctagatttatgtttgtgttgttgct 16510846  T
Q  237 tctttcttggtgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtgatgatg 306  Q
    | |||||||||||||||   |||| |||||||||||| ||||| ||||||||| |||||||||| |||||    
T  16510845 tgtttcttggtgaggat-ggttggcggcgtagtgatgtagtgatggtggtggttatgcgcggtggtgatg 16510777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 12793536 - 12793655
Alignment:
Q  132 cgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttg 231  Q
    |||||||||| ||| ||||||||| || |||||||||  ||||||| | ||||||||||| || |||||||||||||||||| ||| ||  |||||||||    
T  12793536 cgcctttttacgatatgggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttg 12793635  T
Q  232 ctgcctctttcttggtgagg 251  Q
    ||| || |||||||||||||    
T  12793636 ctgtctgtttcttggtgagg 12793655  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 9223377 - 9223443
Alignment:
Q  185 tgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 251  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||  ||| |||||||||||||    
T  9223377 tgttttgttgttggatttcgtcttcctctgaatttgtgtttgtgttgcctcctgtttcttggtgagg 9223443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 16511096 - 16511068
Alignment:
Q  4 agtttaggttgtgtggtggtggtgatgtg 32  Q
    |||||||||||||||||||||||||||||    
T  16511096 agtttaggttgtgtggtggtggtgatgtg 16511068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 59 - 300
Target Start/End: Original strand, 19175830 - 19176069
Alignment:
Q  59 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 158  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  19175830 atccgccgtttttgctccaccattggttct-ttttactacggcgacgaatgcattctccttgtcacaggcggctgcctttttatgatatgggttgtggtt 19175928  T
Q  159 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatatttt 258  Q
    || ||||||| |||| ||||| |||||||||||||||||||||| |||| ||| |||||||||||||||| || ||| | |||||||||||||||  |||    
T  19175929 cctcttcaaaccggcatcgctgcccgtgttttgttgttggattttgtctccctttagatttatgtttgtgctgttgcttgtttcttggtgaggat-gttt 19176027  T
Q  259 ggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtg 300  Q
    || |||||| ||||| |||||| |||||||||||||||||||    
T  19176028 ggcggcgtaatgatgtagtgacagtggtggtgatgcgcggtg 19176069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 72 - 278
Target Start/End: Original strand, 20611145 - 20611349
Alignment:
Q  72 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 171  Q
    |||||||||||| |||||||||||| ||  |||||| || | ||||||||||  ||||||||||||| |||||| | ||||||| || | ||||||| ||    
T  20611145 gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcatcggcggccgcctttctatgattttggttgtgctttcacttcaaaccg 20611243  T
Q  172 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgaggatattttggtggcgtagtga 271  Q
     ||||||| | ||||||||||||||||||||| ||||| ||||||| ||| ||||||||| ||||| |||||||||||||||  ||||| ||| ||||||    
T  20611244 acgtcgctgctcgtgttttgttgttggatttcctcttcatctagatctatatttgtgttgatgcctgtttcttggtgaggat-gtttggcggcatagtga 20611342  T
Q  272 tgcagtg 278  Q
    |||||||    
T  20611343 tgcagtg 20611349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 1653598 - 1653458
Alignment:
Q  112 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 211  Q
    ||||||||||||| ||||||  |||| ||| ||||||||||||  || ||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1653598 ttctccttgtcactggcggcaaccttgttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcct 1653499  T
Q  212 ctagatttatgtttgtgttgctgcctctttcttggtgagga 252  Q
    | | |||||||||||||||||||||| |||||| |||||||    
T  1653498 ccatatttatgtttgtgttgctgcctgtttcttcgtgagga 1653458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 136 - 306
Target Start/End: Complemental strand, 17501891 - 17501725
Alignment:
Q  136 tttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgc 235  Q
    |||||| ||||| ||||||| ||||||||||||  | ||||  |  ||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |    
T  17501891 tttttacgatctaggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttc 17501792  T
Q  236 ctctttcttggtgaggatattttggtggcgtagtgatgcagtgacggtggtggtgatgcgcggtgatgatg 306  Q
    || ||| |||||||||||  |||||  |||||||||| ||||   ||||||||||||||| |||| |||||    
T  17501791 ctattttttggtgaggat-gtttggcagcgtagtgatacagt---ggtggtggtgatgcgtggtggtgatg 17501725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 30936017 - 30935940
Alignment:
Q  170 cggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgag 250  Q
    ||||||||||  ||||||||||||||||| |||||||   |||||||||||||||| ||||| || || ||||||||||||    
T  30936017 cggcgtcgctgtccgtgttttgttgttgggtttcgtc---ctctagatttatgtttttgttgttgtctgtttcttggtgag 30935940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 25595219 - 25595151
Alignment:
Q  183 cgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtgagg 251  Q
    ||||||||||||||   ||||||| |||||||||||| | ||||||||||||| | |||||||||||||    
T  25595219 cgtgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgtttcttggtgagg 25595151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 275
Target Start/End: Complemental strand, 39339574 - 39339351
Alignment:
Q  49 tgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctg 148  Q
    ||||||||| ||||||||||   |||||||||||| |||||||||||| ||  |||||| || | ||||||||||| ||||||||||||| |||||| |     
T  39339574 tgttgttcagatccgccgttac-gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcaccggcggccgcctttctatgatttt 39339477  T
Q  149 ggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttcttggtg 248  Q
    ||||||| || | ||||||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||| |||||||||||| || ||||||||||    
T  39339476 ggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctctagatctatatttgtgttgctgtctgtttcttggtg 39339377  T
Q  249 aggatattttggtggcgtagtgatgca 275  Q
    |||||  ||||| ||||||||||||||    
T  39339376 aggat-gtttggcggcgtagtgatgca 39339351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 134 - 273
Target Start/End: Complemental strand, 31903044 - 31902906
Alignment:
Q  134 cctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgct 233  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||||    
T  31903044 cctttttatgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgct 31902945  T
Q  234 gcctctttcttggtgaggatattttggtggcgtagtgatg 273  Q
    |  | ||||||| ||||| || ||||| ||||||||||||    
T  31902944 gtttgtttcttgctgaggcta-tttggcggcgtagtgatg 31902906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 2062247 - 2062360
Alignment:
Q  138 tttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcct 237  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||||||| || | |||| |||| ||| | ||||||||| ||| ||     
T  2062247 tttacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttgcatctttctcttgatctgtgtttgtgtagcttcca 2062346  T
Q  238 ctttcttggtgagg 251  Q
     |||||||||||||    
T  2062347 gtttcttggtgagg 2062360  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 22886137 - 22886030
Alignment:
Q  144 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgtgttgctgcctctttct 243  Q
    ||||||||| || |||||||||| |  |||||||||  ||||||||||||||||| |||| ||||||||| ||| | |   ||||||||||| | |||||    
T  22886137 atctgggttttgtttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgtttct 22886038  T
Q  244 tggtgagg 251  Q
    ||||||||    
T  22886037 tggtgagg 22886030  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 27739128 - 27739268
Alignment:
Q  112 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 211  Q
    |||| ||||||||  | |||| |||||||  |||||| |||||| ||||||||||   || ||||||| || ||||||||||||| | |||| |||||||    
T  27739128 ttcttcttgtcactagtggccaccttttttcgatctgcgttgtgtttccgcttcagggcgacgtcgctgcctgtgttttgttgtttggtttcatcttcct 27739227  T
Q  212 ctagatttatg-tttgtgttgctgcctctttcttggtgagg 251  Q
    || ||||| || ||||||| ||||| | ||||||| |||||    
T  27739228 cttgatttgtgatttgtgtggctgcttgtttcttgatgagg 27739268  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 29486398 - 29486463
Alignment:
Q  148 gggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 213  Q
    |||||||| |||||||||| | |||||||||| |||  ||||||||||| | |||||||| |||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtttcgtctccctct 29486463  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 25505606 - 25505550
Alignment:
Q  171 ggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgt 227  Q
    ||||||||| |||||||||||||||| |  ||||||||||||| ||| ||| |||||    
T  25505606 ggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttttgt 25505550  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 211
Target Start/End: Original strand, 27712379 - 27712478
Alignment:
Q  112 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 211  Q
    ||||||||||||| || ||  |||| |||| ||||| | ||||| |||  ||||| | |||||||| | |||||||||||||||||| |||| |||||||    
T  27712379 ttctccttgtcaccggtggttgcctgtttacgatctagattgtgtttctacttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttcct 27712478  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 697664 - 697769
Alignment:
Q  91 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 190  Q
    |||||| ||||| || |||| ||||||||||||| |||    |||| |||| ||||| ||||| | |||||||||| | |||||||||| |||||||  |    
T  697664 tttacttcggtgccggaagccttctccttgtcactggcatgtgcctgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgtgct 697763  T
Q  191 gttgtt 196  Q
    ||||||    
T  697764 gttgtt 697769  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 8730301 - 8730357
Alignment:
Q  171 ggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtttgt 227  Q
    ||||||||| |||||||||||||||| |  ||||||||||||| ||| ||| |||||    
T  8730301 ggcgtcgctgcccgtgttttgttgtttggcttcgtcttcctctggatctatttttgt 8730357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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