View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13234_low_3 (Length: 576)
Name: NF13234_low_3
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13234_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 13 - 560
Target Start/End: Complemental strand, 3531068 - 3530516
Alignment:
| Q |
13 |
aatattataaagttttactatcatcacattaaataaattaaatacttaatacctgaattcctataaattacaaatggcttgatacatatttttaaaatat |
112 |
Q |
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| T |
3531068 |
aatattataaagttttactatcatcacattaaataaattaaatacttaatacctgaattcctataaattacaaatggcttgatacatatttttaaaatat |
3530969 |
T |
|
| Q |
113 |
tgtatgcgttttccattgtcaatactaatacatctcttcctctnnnnnnncaaatacatctctttatatgtatttaacgtacaaaacaaatgtgtatctc |
212 |
Q |
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| T |
3530968 |
tgtatgcgttttccattgtcaatactaatacatctcttcctctaaagaaacaaatacatctctttatatgcatttaacgtacaaaacaaatgtgtatctc |
3530869 |
T |
|
| Q |
213 |
atacgattaagtgcactagattgtcgttcaataaaattatttgcaattnnnnnnnnttgcatctcatacgattgatctttctactctatataaaattcaa |
312 |
Q |
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| T |
3530868 |
atacgattaagtgcactagattgtcgttcaataaaattatttgcaattaaaaaaaattgcatctcatacgattgatctttctactctatataaaattcaa |
3530769 |
T |
|
| Q |
313 |
tgaagagaaacatcattcatttgttatagttgccacataaataatctaagttaaagatactaggaaacatattgcaaacattggagagg----gtgaaac |
408 |
Q |
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| T |
3530768 |
cgaagagaaacatcattcatttgttatagttgccacataaataattaaagttaaagatactaggaaacatattgcaaacattggagagggtgagtgaaac |
3530669 |
T |
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| Q |
409 |
ctctgataagaaaataacatagtatctcgctttcaaccatcaatagtactgcaacttgac-ttttttacataaattttgcaattgttactcatgtgctga |
507 |
Q |
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| T |
3530668 |
ctctgataagaaaataacatagtatctcgctttcaaccatcaatagaactgcaacttgactttttttacataaagcttgcaattgttacttatgtgctga |
3530569 |
T |
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| Q |
508 |
aaaatgtgcatattcttttcttttcaaataatctacacgcaagataatcaaat |
560 |
Q |
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| T |
3530568 |
aaaatgtgcatattcttttctttccaaataatctacacgcaagataatcaaat |
3530516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 9827439 - 9827483
Alignment:
| Q |
430 |
gtatctcgctttcaaccatcaatagtactgcaacttgactttttt |
474 |
Q |
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| T |
9827439 |
gtatctcgctttcaaccatcaataagactacaacttgattttttt |
9827483 |
T |
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