View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13234_low_4 (Length: 565)
Name: NF13234_low_4
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13234_low_4 |
 | |
|
| [»] scaffold0391 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 235 - 552
Target Start/End: Original strand, 33953913 - 33954216
Alignment:
| Q |
235 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttctttt-gtataaatacatgatttgtattagctattctca |
333 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33953913 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttctttttgtataaatacatgatttgtattagctattctca |
33954012 |
T |
|
| Q |
334 |
atcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactct |
433 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33954013 |
atcaataaattcaatttttaatttttttatcagctcattctattgatttatttacattctaataaggtggtagtaaatccttctatgcttctccaactct |
33954112 |
T |
|
| Q |
434 |
aaaaagcttttcgtagtccttaggttcatactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaa |
533 |
Q |
| |
|
||||||||||| ||||||||| ||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33954113 |
aaaaagctttttgtagtcctttggttc-------------cc--tgtttctgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaa |
33954197 |
T |
|
| Q |
534 |
aatttgtcaagcatggtct |
552 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
33954198 |
aatttgtcaagcatggtct |
33954216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 235 - 552
Target Start/End: Original strand, 33976514 - 33976819
Alignment:
| Q |
235 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
334 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33976514 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
33976613 |
T |
|
| Q |
335 |
tcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactcta |
434 |
Q |
| |
|
|||||| |||||||||| || | | ||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
33976614 |
tcaatatattcaatttttaa---ttttaactactcattctaatgatttatttacatgataataaggtggtag----------tatgcttctccagttcta |
33976700 |
T |
|
| Q |
435 |
aaaagcttttcgtagtccttaggttc--atactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctca |
532 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
33976701 |
aaaagcttttcgtagtccttaggttcctttttttttttgttcc-ttgtttctgagttcttcagtcatagatcaaagtcggctagaagcagttgatcctca |
33976799 |
T |
|
| Q |
533 |
aaatttgtcaagcatggtct |
552 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
33976800 |
aaatttgccaagcatggtct |
33976819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 235 - 552
Target Start/End: Original strand, 33961219 - 33961522
Alignment:
| Q |
235 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
334 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33961219 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaa |
33961318 |
T |
|
| Q |
335 |
tcaataaattcaattttaaannnnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaactcta |
434 |
Q |
| |
|
|||||| |||||||||| || | | ||||||||| ||||||||||||| || |||||| |||||| |||||||||||| |||| |
|
|
| T |
33961319 |
tcaatatattcaatttttaa---ttttaactactcattctaatgatttatttacaagataataagctggtag----------tatgcttctccagttcta |
33961405 |
T |
|
| Q |
435 |
aaaagcttttcgtagtccttaggttcatactttcttgttcctttgtttccgagttcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaaa |
534 |
Q |
| |
|
||||| |||||||||||||||||||| | ||| ||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33961406 |
aaaagtttttcgtagtccttaggttcctttttttttgttcc-ttgtttctgagttcttcagtcatagatcaaagtcggctagaagcagttgatcctcaaa |
33961504 |
T |
|
| Q |
535 |
atttgtcaagcatggtct |
552 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
33961505 |
attttccaagcatggtct |
33961522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 33953726 - 33953916
Alignment:
| Q |
22 |
gtgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaa |
121 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| ||||| | |||||| |
|
|
| T |
33953726 |
gtgcaatctaaagaatctggacatggcaagttgtgcaagtattgaattgccattctcagttgtcaatcttcagaatttgaagacgataacctgcgatgaa |
33953825 |
T |
|
| Q |
122 |
gagacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttc |
212 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33953826 |
gagacggctgctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcttcatgttgatgttaacttaaattggcttc |
33953916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 33993246 - 33993436
Alignment:
| Q |
22 |
gtgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaa |
121 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || ||||| ||||| | |||||| |
|
|
| T |
33993246 |
gtgcaatctaaagaatctggacatggcaagttgtgcaagtattgaattgccattctcagttgtcaatcttcagaatttgaagacgataacctgcgatgaa |
33993345 |
T |
|
| Q |
122 |
gagacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttc |
212 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33993346 |
gagacggctgctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcttcatgttgatgttaacttaaattggcttc |
33993436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 33961033 - 33961222
Alignment:
| Q |
23 |
tgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaag |
122 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || ||||| ||||| | ||||||| |
|
|
| T |
33961033 |
tgcaatctaagaaatctgtacatggcaagttgtgcaggtattgaattgccattctcagttttcaatcttcagaatttgaagacgataacctgcgatgaag |
33961132 |
T |
|
| Q |
123 |
agacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttc |
212 |
Q |
| |
|
|||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33961133 |
agacggctgctacatgggaagattttcagcatatgcttcccaatatgaagatagaggttcttcatgttgatgttaacttaaattggcttc |
33961222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 33976327 - 33976517
Alignment:
| Q |
22 |
gtgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaa |
121 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||| || ||||| ||||| | |||||| |
|
|
| T |
33976327 |
gtgcaatctaaagaatctggacatggcaacttgtgcaagtattgaattgccattctcagttgtcaatcttcagaatttgaagacgataacctgcgatgaa |
33976426 |
T |
|
| Q |
122 |
gagacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttc |
212 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33976427 |
gagacggctgctacatgggaagatttccagcatatgcttcacaatatgaagatagaggttcttcatgttgatgttaacttaaattggcttc |
33976517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 235 - 351
Target Start/End: Original strand, 33993433 - 33993550
Alignment:
| Q |
235 |
cttctttgaatgacttttgtacagtatataattaaaattcttttgtaatattttgtaatttc-ttttgtataaatacatgatttgtattagctattctca |
333 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33993433 |
cttctttgaatgacttttgtatagcatataattaaaattcttttgtaatattttgtaatttctttttgtataaatacatgatttgtattagctattctca |
33993532 |
T |
|
| Q |
334 |
atcaataaattcaatttt |
351 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
33993533 |
atcaatatattcaatttt |
33993550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 33983454 - 33983569
Alignment:
| Q |
140 |
gaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttcaataaatgatctgctaagacctcttct |
239 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||| | ||| | |||||||||| ||||||||||||| |
|
|
| T |
33983454 |
gaagatttccagcttatgcttcctaatatgaagatagaggttcctcaggttgatgctaacttaaactaactttagtaaatgatctcataagacctcttct |
33983553 |
T |
|
| Q |
240 |
ttgaatgacttttgta |
255 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
33983554 |
ttgaatgacttctgta |
33983569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 563
Target Start/End: Original strand, 33983677 - 33983948
Alignment:
| Q |
295 |
tcttttgtataaatacatgatttgtattagctattctcaatcaataaattcaattttaaannnnnnn--atcagctcattctattgatttatttacatga |
392 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||| |
|
|
| T |
33983677 |
tcttttgtataactacatgatttgtattagctattctcaatcaataaattcaatttttttttttttttaattttctcattctatagatttttttacatga |
33983776 |
T |
|
| Q |
393 |
caataaggtggtagtaaacccttctat--gcttctccaactct-aaaaagcttttcgt-agtccttaggttcatactttcttgttcctttgtttccgagt |
488 |
Q |
| |
|
||||| | ||||||| |||||||| | |||||||||||| ||||||||||| | ||| |||||||| || |||||| |||| | ||| |||| |
|
|
| T |
33983777 |
taataaagc--tagtaaatccttctatatggttctccaactcttaaaaagcttttttttagtacttaggtttctattttctttttccctattttt-gagt |
33983873 |
T |
|
| Q |
489 |
tcttcaatcatagatcaaagtcggcaagaagcagttgatcctcaaaatttgtcaagcatggtctgtgctgctcct |
563 |
Q |
| |
|
||||||||||||||||||| | ||||| ||| || ||||||| ||| ||||||| |||||||| || ||||||| |
|
|
| T |
33983874 |
tcttcaatcatagatcaaatttggcaaaaagttgtcgatcctccaaacttgtcaaacatggtctttgttgctcct |
33983948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 33914552 - 33914736
Alignment:
| Q |
26 |
aatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaagaga |
125 |
Q |
| |
|
|||||||| ||||| |||||| | |||||| || || |||||||||||||||||||||||||||| ||| |||||| ||| | ||||||||||| |
|
|
| T |
33914552 |
aatctaagaaatctatacatgtctagttgtacaagttgtgaattgccattttcagttgtcaatcttgcgaatttaaaggtgata---tgtgatgaagaga |
33914648 |
T |
|
| Q |
126 |
catcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttca |
213 |
Q |
| |
|
| | ||| |||||||| |||||| |||| || ||||| | | |||||||||||||| ||||| || ||||||||||||||||| |
|
|
| T |
33914649 |
cggctgcttcatgggaatctttccaatctatgatttccaatctcactatagaggttcctcaagttgaagtcaacttaaattggcttca |
33914736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 103
Target Start/End: Original strand, 33943293 - 33943346
Alignment:
| Q |
50 |
agttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaag |
103 |
Q |
| |
|
||||||||| || |||||||||||| || ||||||||||||||||| |||||| |
|
|
| T |
33943293 |
agttgtgcaagttgtgaattgccattctccgttgtcaatcttcagaatttaaag |
33943346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 13291 - 13510
Alignment:
| Q |
23 |
tgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaag |
122 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
13291 |
tgcaatctaagaaatctgtacatggcaagttgtgcaagtattgaattgccattctcagttgtcaatcttcagaacttgaagacgataacttgcgatgaag |
13390 |
T |
|
| Q |
123 |
agacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttcaataaatgat |
222 |
Q |
| |
|
||||| | || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13391 |
agacagctgcctcatgggaagattttcagcctatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttcagtaaatgat |
13490 |
T |
|
| Q |
223 |
ctgctaagacctcttctttg |
242 |
Q |
| |
|
|| | |||||||||| |||| |
|
|
| T |
13491 |
ctcccaagacctcttatttg |
13510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 8275701 - 8275468
Alignment:
| Q |
22 |
gtgcaatctaaggaatctgtacatggcaagttgtgcaggtattgaattgccattttcagttgtcaatcttcagaacttaaagacaataacttctgatgaa |
121 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| || ||||| | ||| | |||||| |
|
|
| T |
8275701 |
gtgcaacctaaggaatctatacatggcaagttgtgcaagtattgagcttccattttcagatgtcaatcttcagaatttgaagacgaaaacctgcgatgaa |
8275602 |
T |
|
| Q |
122 |
gagacatcagctacatgggaagatttccagcatatgcttcccaatatgaagatagaggttcctcatgttgatgttaacttaaattggcttcaataaatga |
221 |
Q |
| |
|
||||| | |||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||||||||||||||||||||| | ||| |||| || |
|
|
| T |
8275601 |
gagacggctgctacatgggaagatttccatcatacgcttcctagtatgaagatagaggttcctcatgttgatgttaacttaaattgccatcattaaagga |
8275502 |
T |
|
| Q |
222 |
tctgctaagacctcttctttgaatgacttttgta |
255 |
Q |
| |
|
||||||| |||| |||||||||||| ||||||| |
|
|
| T |
8275501 |
tctgctacgaccgcttctttgaatggattttgta |
8275468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 257 - 429
Target Start/End: Complemental strand, 8275392 - 8275222
Alignment:
| Q |
257 |
agtatataattaaaattcttttgtaatattttgtaatttcttttgtataaatacatgatttgtattagctattctcaatcaataaattcaattttaaann |
356 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||| || |
|
|
| T |
8275392 |
agtatataactaaaattcttttgtaatcttttgtaaattcttttgtataaatgcatgatttgtattagctattcttaatcaatagattaaatttttaa-- |
8275295 |
T |
|
| Q |
357 |
nnnnnatcagctcattctattgatttatttacatgacaataaggtggtagtaaacccttctatgcttctccaa |
429 |
Q |
| |
|
||| |||||||||| ||||| ||||||||| ||||||||| ||||||| ||| |||||||||||||| |
|
|
| T |
8275294 |
tttttatctactcattctatagatttgtttacatgataataaggtgctagtaaatcctcctatgcttctccaa |
8275222 |
T |
|
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