View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13234_low_7 (Length: 487)
Name: NF13234_low_7
Description: NF13234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13234_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 5677517 - 5677064
Alignment:
| Q |
18 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaac |
117 |
Q |
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| T |
5677517 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaac |
5677418 |
T |
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| Q |
118 |
agtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctagaaaaggatagaaaagttaaaaataaat |
217 |
Q |
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| T |
5677417 |
agtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctaaaaaaggatagaaaagttaaaaataaat |
5677318 |
T |
|
| Q |
218 |
atgcttttatagagtagagatctatgtagcaccgacacaagttgtgtctgtttcccgcactgacacatataattacatttaacgagtgtctatgtgttag |
317 |
Q |
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| T |
5677317 |
atgcttttatagagtagagatctatgtagcaccgacacaagttgtgtctgtttcccgcactgacacatataattacatttaacgagtgtctatgtgttag |
5677218 |
T |
|
| Q |
318 |
tgttgtgatgattttcatatctgtgtcggtgctccataggtagaaatctccttgtttgcaaaagaaaagaagaacacaattactatgattgtagtatata |
417 |
Q |
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| T |
5677217 |
tgttgtgatgattttcatatttgtgtcggtgctccataggtagaaatctcc-tgtttgcaaaagaaaagaagaacacaattactatgattgcagtatata |
5677119 |
T |
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| Q |
418 |
agatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagc |
472 |
Q |
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| T |
5677118 |
agatacatgttttgaaaaatgcgaacattaattagacctttatacactcaaaagc |
5677064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 39777900 - 39778051
Alignment:
| Q |
24 |
ccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttg |
123 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| | | || |
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| T |
39777900 |
ccagctgttgattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagttctaattgcaatgatggctagagggtttaaaaattgtg |
39777999 |
T |
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| Q |
124 |
ctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggt |
175 |
Q |
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| T |
39778000 |
gtattggtcctattataatgctttattcacagaaatctctgagaggtttggt |
39778051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 47798244 - 47798162
Alignment:
| Q |
18 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgat |
100 |
Q |
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||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||| |
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| T |
47798244 |
cagaggccagctattgattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgat |
47798162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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