View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_high_10 (Length: 342)
Name: NF13235_high_10
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 50245127 - 50244806
Alignment:
| Q |
1 |
aagaatatattcgtaattgttggtctacattccacaattataaggtctgcaccaaggcttgaaaatgcattcaaggaaatatcttgttgacctgtgccat |
100 |
Q |
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| T |
50245127 |
aagaaaatattcgtaattgttggtctacattccacaattataaggtctgcaccaaggcttgaaaatgcattcaaggaaatatcttgttgacctgtgccat |
50245028 |
T |
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| Q |
101 |
tatgtaattctataacaaaaaagaagttgaatatgcaccaaataaaattatgacatcaagttcttcatgctcatgtcatcatggttaattccaaacaatt |
200 |
Q |
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| T |
50245027 |
tatgtaattctataccaaaaaaaaagttgaatatgcaccaaataaaattatgacatcaagttcttcatgc-----tcatcatggttaattccaaacaatt |
50244933 |
T |
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| Q |
201 |
atcaaaatgaacgagcaatgatattatgttgctaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50244932 |
atcaaaatgaacgagcaatgatattatgttgttaagtgttttgggagctacagaggaatgaaagaatgtatgactaagcaaactattgttataaaacaaa |
50244833 |
T |
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| Q |
301 |
tcataaaattgataatggggaacatat |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50244832 |
tcataaaattgataatggggaacatat |
50244806 |
T |
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