View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13235_high_19 (Length: 223)

Name: NF13235_high_19
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13235_high_19
NF13235_high_19
[»] chr6 (1 HSPs)
chr6 (18-208)||(8159245-8159435)
[»] chr3 (1 HSPs)
chr3 (18-172)||(4084080-4084247)
[»] chr8 (7 HSPs)
chr8 (17-172)||(44301308-44301482)
chr8 (26-172)||(44312207-44312368)
chr8 (27-80)||(43896073-43896126)
chr8 (17-86)||(44306520-44306590)
chr8 (175-210)||(44312137-44312172)
chr8 (175-209)||(43895856-43895890)
chr8 (178-207)||(44306284-44306313)
[»] chr4 (2 HSPs)
chr4 (18-89)||(18701668-18701739)
chr4 (89-122)||(18701618-18701651)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 8159245 - 8159435
Alignment:
Q  18 cttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagctttgcaatggt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159245 cttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataattggtttggtttattagctttgcaatggt 8159344  T
Q  118 ttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctctg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159345 ttgtttcttatttataacttattttttatgctgaatctgttgcttaattattgatactgtgttctgcatttaacacttgatcctatctctg 8159435  T

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Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 4084247 - 4084080
Alignment:
Q  18 cttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataat-------------tggtttggtttatta 104  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||| ||||||||| |||||||| ||             |||||||| || |||    
T  4084247 cttattcggtctcaaaggattcaggagagaaattttcaaatggtgtgaatggattcattccagagaaatgatcctacttaccagttggtttggcttgtta 4084148  T
Q  105 gctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 172  Q
    ||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4084147 gctttactatggtttgttgcttatttataacttattttttatggtgaatttgttgcttaattattgat 4084080  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 44301482 - 44301308
Alignment:
Q  17 acttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattcta-----gagaaataat--------------tggtttgg 97  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |     | ||||| ||              | ||||||    
T  44301482 acttattcggtgtcaaaagattctggagagaaattttcaaatggtgtgaattgattcattccattccagtgaaatgatcctacttacccagtttgtttgg 44301383  T
Q  98 tttattagctttgcaatggtttgtttcttatttataacttattttttatggtgaatctgttgcttaattattgat 172  Q
     || |||||||||| ||| |||||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  44301382 cttgttagctttgctatgttttgttgcttatttataacttattttttatggtaaatctgctgcttaattattgat 44301308  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 172
Target Start/End: Complemental strand, 44312368 - 44312207
Alignment:
Q  26 gtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataat--------------tggtttggtttattagctttgc 111  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||||||| |||||| | ||              |||||||| || ||| || |||    
T  44312368 gtctcaaaagtttctggagagaaattttcaaatggtgtgaatggattcattcaagagaattgatcctacttcgccagttggtttggcttgttaactatgc 44312269  T
Q  112 aatggtttgtttcttatttataacttatttttt-atggtgaatctgttgcttaattattgat 172  Q
      ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  44312268 tttggtttgttgcttatttataacttatttttttatggtgaatttgttgcttaattattgat 44312207  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 43896126 - 43896073
Alignment:
Q  27 tctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctag 80  Q
    ||||| |||||| ||||||||||||||||||||||||| || ||||||||||||    
T  43896126 tctcataagattctggagagaaattttcaaatggtgtggatggattcattctag 43896073  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 44306590 - 44306520
Alignment:
Q  17 acttattcggtctcaaaagattgtggagagaaatttt-caaatggtgtgaattgattcattctagagaaat 86  Q
    |||||||| |||||| |||||| ||||||||  |||| |||||||||||||| |||||||||||| |||||    
T  44306590 acttattctgtctcataagattctggagagagttttttcaaatggtgtgaatggattcattctagggaaat 44306520  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Complemental strand, 44312172 - 44312137
Alignment:
Q  175 tgtgttctgcatttaacacttgatcctatctctgct 210  Q
    |||||||||||||||||| |||||||||||||||||    
T  44312172 tgtgttctgcatttaacagttgatcctatctctgct 44312137  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 43895890 - 43895856
Alignment:
Q  175 tgtgttctgcatttaacacttgatcctatctctgc 209  Q
    ||||||||||||||||||| |||||||||||||||    
T  43895890 tgtgttctgcatttaacacctgatcctatctctgc 43895856  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 44306313 - 44306284
Alignment:
Q  178 gttctgcatttaacacttgatcctatctct 207  Q
    ||||||||||||||||||||||||||||||    
T  44306313 gttctgcatttaacacttgatcctatctct 44306284  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 18701739 - 18701668
Alignment:
Q  18 cttattcggtctcaaaagattgtggagagaaattttcaaatggtgtgaattgattcattctagagaaataat 89  Q
    |||||||||||||||||||||  ||  | | |||||||||||||||||||||||||||||||||||||||||    
T  18701739 cttattcggtctcaaaagattccgggcatacattttcaaatggtgtgaattgattcattctagagaaataat 18701668  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 18701651 - 18701618
Alignment:
Q  89 ttggtttggtttattagctttgcaatggtttgtt 122  Q
    ||||||||||||||||||||||||||||||||||    
T  18701651 ttggtttggtttattagctttgcaatggtttgtt 18701618  T

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