View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13235_high_7 (Length: 386)

Name: NF13235_high_7
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13235_high_7
NF13235_high_7
[»] chr7 (8 HSPs)
chr7 (113-381)||(26823694-26823966)
chr7 (1-76)||(26824065-26824140)
chr7 (120-230)||(26835862-26835969)
chr7 (191-265)||(26805141-26805215)
chr7 (7-64)||(26836027-26836084)
chr7 (7-54)||(26805334-26805381)
chr7 (7-47)||(26824166-26824206)
chr7 (7-64)||(26795431-26795488)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 113 - 381
Target Start/End: Complemental strand, 26823966 - 26823694
Alignment:
Q  113 ctggctcttagtttttgtttgtgttgagatcagagtcttgtttattctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaacttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26823966 ctggctcttagtttttgtttgtgttgagatcagagtcttgtttgttctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaacttt 26823867  T
Q  213 cttatataataatttgatgataatttgattgattttaaacata----tataaaagtaaatgatatatctaagaacaaagaaagtatcatgaaggttcann 308  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  26823866 cttatataataatttgatgataatttgattgattttaaacatatatatataaaagtaaatgatatatctaggaacaaagaaagtatcatgaaggttcatg 26823767  T
Q  309 nnnnnngtacgtttataggatttaatgttaacgcgtaggattgtgataacgatggtgattaagaataatctac 381  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26823766 ttttttgtacgtttataggatttaatgttaacgcgtaggattgtgataacgatggtgattaagaataatctac 26823694  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26824140 - 26824065
Alignment:
Q  1 gtgataggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatgacgaggttggtga 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26824140 gtgataggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatgacgaggttggtga 26824065  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 26835969 - 26835862
Alignment:
Q  120 ttagtttttgtttgtgttgagatcagagtcttgtttattctgttaggtaataaatatatgtgtgagaataatgggaggaatcgtttaaactttcttatat 219  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||| ||   |||||||||||||||||||| |||| |||||||||||||||||||||    
T  26835969 ttagtttttgtttgtgatgagatcagaatcttgtttgttctgttaggcaa---atatatgtgtgagaataatgagagggatcgtttaaactttcttatat 26835873  T
Q  220 aataatttgat 230  Q
    |||||||||||    
T  26835872 aataatttgat 26835862  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 191 - 265
Target Start/End: Complemental strand, 26805215 - 26805141
Alignment:
Q  191 tgggaggaatcgtttaaactttcttatataataatttgatgataatttgattgattttaaacatatataaaagta 265  Q
    ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||| ||||    
T  26805215 tgggagggatcgtttaaactttcttatataacaacttgatgatgatttgattgattttaaacataaataagagta 26805141  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26836084 - 26836027
Alignment:
Q  7 ggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatga 64  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||    
T  26836084 ggtgcagaggaagaaggttgtggttgataaggataagccatgatgatagtaacgatga 26836027  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 26805381 - 26805334
Alignment:
Q  7 ggtgcagaggcagaaggttgtggttgataaggataagccatgatgata 54  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  26805381 ggtgcagaggcagatggttgtggttgataaggataagccatgatgata 26805334  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 26824206 - 26824166
Alignment:
Q  7 ggtgcagaggcagaaggttgtggttgataaggataagccat 47  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  26824206 ggtgcagaggcagatggttgtggttgacaaggataagccat 26824166  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26795488 - 26795431
Alignment:
Q  7 ggtgcagaggcagaaggttgtggttgataaggataagccatgatgataataatgatga 64  Q
    |||||||||||||| || |||| | ||||||||||||||||| ||| ||| |||||||    
T  26795488 ggtgcagaggcagatggctgtgctggataaggataagccatgttgacaatgatgatga 26795431  T

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