View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13235_high_8 (Length: 361)

Name: NF13235_high_8
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13235_high_8
NF13235_high_8
[»] chr8 (5 HSPs)
chr8 (153-346)||(39710224-39710417)
chr8 (58-152)||(39710098-39710191)
chr8 (248-346)||(39691708-39691806)
chr8 (248-346)||(39703715-39703813)
chr8 (19-63)||(39710039-39710083)
[»] chr2 (1 HSPs)
chr2 (268-313)||(38712202-38712247)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 153 - 346
Target Start/End: Original strand, 39710224 - 39710417
Alignment:
Q  153 ctataattttggcaatgattaacatcgtacgcgtccacctcactataaataacaagtaccaaccttcactcttttaacacatattaaaatccttcctcta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39710224 ctataattttggcaatgattaacatcgtacgcgtccacctcactataaataacaagtaccaaccttcactcttttcacacatattaaaatccttcctcta 39710323  T
Q  253 aataatttagcaattaacaatggtgagatctggttttcttttgattgtatcaatgctgattcttagcacttcattatcgtcttcatacatgttt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39710324 aataatttagcaattaacaatggtgagatctggttttcttttgattgtatcaatgttgattcttagcacttcattatcgtcttcatacatgttt 39710417  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 39710098 - 39710191
Alignment:
Q  58 ggaataaacttgttaactcacacacaagaaaacaagagatatggtatatgatcatataatacggcactaatctcgtttacttagtttctcattag 152  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  39710098 ggaacaaacttgttaactcacacacaagaaaacaagagatatggtatat-atcatataatatggcactaatctcgtttacttagtttctcattag 39710191  T

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Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 346
Target Start/End: Complemental strand, 39691806 - 39691708
Alignment:
Q  248 ctctaaataatttagcaattaacaatggtgagatctggttttcttttgattgtatcaatgctgattcttagcacttcattatcgtcttcatacatgttt 346  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||  |||| ||||||||||| || ||| |||||| ||||    
T  39691806 ctctaaatattttagcaattaacaatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagttt 39691708  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 39703715 - 39703813
Alignment:
Q  248 ctctaaataatttagcaattaacaatggtgagatctggttttcttttgattgtatcaatgctgattcttagcacttcattatcgtcttcatacatgttt 346  Q
    ||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||  |||| ||||||||||| || ||| |||||| ||||    
T  39703715 ctctaaatattttagcaattaacaatgatgagatatggttttgttttgattgtatcaatgctagttctcagcacttcattgtcatctgcatacaagttt 39703813  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39710039 - 39710083
Alignment:
Q  19 attaatcacgtatatatgtgctaaaaaaggaattgatttggaata 63  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||    
T  39710039 attaatcacgtatatatgttctaaaaaaggaattcatttggaata 39710083  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 38712247 - 38712202
Alignment:
Q  268 aacaatggtgagatctggttttcttttgattgtatcaatgctgatt 313  Q
    ||||||||||||||  |||||||||||| |||| ||||||||||||    
T  38712247 aacaatggtgagattaggttttcttttgtttgtgtcaatgctgatt 38712202  T

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