View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_12 (Length: 309)
Name: NF13235_low_12
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 30016344 - 30016622
Alignment:
| Q |
1 |
ttaagagtaaaatagtaacaatgaaataagacaaattaataaacctaatctgggtnnnnnnntagaggttatatttgtagagatatagataatatcatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
30016344 |
ttaagagtaaaatagtaacaatgaaataagacaaattaataaacctaatctgagtaaaaaaatagaggttatatttgtagagatatagataatatcatat |
30016443 |
T |
|
| Q |
101 |
ttattttaatggtggtagccaatgctaaaaatagtggtggaaaatgatgaggtgtggtgatcccacaccacacgtgcttaaatgtggttttgttttccct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30016444 |
ttattttaatggtggtagccaatgctaaaaatagtggtggaaaatgatgaggtgtggtgatcccacaccacacgtgcttaaatgtggttttgttttccc- |
30016542 |
T |
|
| Q |
201 |
agctatatatatagtagaggtggtagtttgtgaggacgttgcatgagtttggaacacacacataattaaaaaatgcaaatagttaattatc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30016543 |
-----------tagtagaggtggtagtttgtgaggacgttgcatgagtttggaacacacacataattaaaaaatgcaaatagttaattatc |
30016622 |
T |
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