View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13235_low_16 (Length: 248)
Name: NF13235_low_16
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_16 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 43715887 - 43716134
Alignment:
| Q |
1 |
ctcatttgtgcatgtcaataaagattatattaaaaccttaccacttgaatgagaagacatttcaaatatgatttttccaggtctatgcagactttcaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
43715887 |
ctcatttgtgcatgtcaataaagattctattaaaaccttaccaattgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaatt |
43715986 |
T |
|
| Q |
101 |
gtaattctgagatatggctcaacccagtggaccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43715987 |
gtaattctgagatatggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcct |
43716086 |
T |
|
| Q |
201 |
cctcctccatatttttatctgccgtaatcagagacaacaagaagaaga |
248 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
43716087 |
cctcctccatatttttatctgccatagtcagagacaacaagaagaaga |
43716134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 6816739 - 6816638
Alignment:
| Q |
101 |
gtaattctgagatatggctcaacccagtggaccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcct |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||| ||||||| || || ||||||||| |||||| ||||||||||||||| | |||||| | |||| |
|
|
| T |
6816739 |
gtaattctaagatatggttcaacccagtgatccacttgtcctctacaattctggaagacaacttcaataagctttggagctggcacaatatcattatcct |
6816640 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
6816639 |
cc |
6816638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 52891741 - 52891541
Alignment:
| Q |
1 |
ctcatttgtgcatgtcaataaagattatattaaaaccttaccacttgaatgagaagacatttcaaatatgatttttccaggtctatgcagactttcaatt |
100 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||| |
|
|
| T |
52891741 |
ctcatttgtgcatgtcaatgaagattctattaaaaccttaccacttgaatgagaagacatttcaaatatgatttt-ccagttctatgcaaacgttcaatt |
52891643 |
T |
|
| Q |
101 |
gtaattctgagatatggctcaacccagtggaccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcct |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
52891642 |
gtaattctgagatacggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcct |
52891543 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
52891542 |
cc |
52891541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University