View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_17 (Length: 235)
Name: NF13235_low_17
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_17 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 43715645 - 43715412
Alignment:
| Q |
1 |
tactgtgttcaaatttatagttagaaatcaactataacaaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagtttatctgttttt |
100 |
Q |
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| T |
43715645 |
tactgtgttcaaatttatagttagaaatcaactgtaacaaatcacttgcgcgatgaaattttttcattcatttttcaatgagttcagtttatctatttt- |
43715547 |
T |
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| Q |
101 |
gtaaattagccaaattacttaaagataatagggaaagacaccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaa |
200 |
Q |
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| T |
43715546 |
gtaaattagccaaattacttaaagataatagggaaagacaccaaatgcaacttcatgaggggataaattttttgcagatttcagatggtctatactaaaa |
43715447 |
T |
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| Q |
201 |
cgccgcattgaatcttatcatattgcaaaaggtct |
235 |
Q |
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| T |
43715446 |
cgccgcattgaatcttatcatattgcaaaaggtct |
43715412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 52891938 - 52892170
Alignment:
| Q |
1 |
tactgtgttcaaatttatag--ttagaaatcaactataacaaatcacttgtgcgatgaaattttttcattcatttttcaatgagttcagtttatctgttt |
98 |
Q |
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||||| |||||||||||||| ||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||| |||||||||| | | |
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| T |
52891938 |
tactgagttcaaatttatagagttagaaatcaactgctacgaatcacttgtcggatgaaatttattcattcatttttcaatgagtgcagtttatctatct |
52892037 |
T |
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| Q |
99 |
ttgtaaattagccaaattacttaaagataatagggaaagacaccaaatgcaacttcatgaggggataaatttt-ttgcagatttcagatggtctatacta |
197 |
Q |
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| T |
52892038 |
t-gtaagttggcaaaatttcttaaagataatagggaaagacaccaaatgcaacttcataagaggatatatttttttgcagatttcagatggtctgtacta |
52892136 |
T |
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| Q |
198 |
aaacgccgcattgaatcttatcatattgcaaaag |
231 |
Q |
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| T |
52892137 |
caacgccgcattgactcttagcatattgcaaaag |
52892170 |
T |
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