View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_18 (Length: 230)
Name: NF13235_low_18
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 26824163 - 26824376
Alignment:
| Q |
1 |
cctatggcttacccttgtcacccccacccatctgcctctgcaccgccgatgccggtgcttccaaccaccataatatgccctcaacattgtgatccgtatc |
100 |
Q |
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| T |
26824163 |
cctatggcttatccttgtcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccataatatgccctcaatattgtgatccgtatc |
26824262 |
T |
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| Q |
101 |
cggtgaatttggccgtagtgaaaaaggtgatgaccattcagggaatgtaggttatggctatgtgtggctaaattaattgagaaaactatgttctaatcat |
200 |
Q |
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| T |
26824263 |
cggtgaatttggccgtagtgaaaaaggtgatgaccattcagggaatgtaggttatggctatgtgtggctaaattaattgagaaaactatgttctaatcat |
26824362 |
T |
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| Q |
201 |
gattatgaacatgt |
214 |
Q |
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|||||||||||||| |
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| T |
26824363 |
gattatgaacatgt |
26824376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 26805341 - 26805468
Alignment:
| Q |
4 |
atggcttacccttgtcacccccacccatctgcctctgcaccgccgatgccggtgcttccaaccaccataatatgccctcaacattgtgatccgtatccgg |
103 |
Q |
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| T |
26805341 |
atggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccggtgcttccaaccaccatatttggccctcaatattgtgctccgtatccat |
26805440 |
T |
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| Q |
104 |
tgaatttggccgtagtgaaaaaggtgat |
131 |
Q |
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| T |
26805441 |
tggatttggctgtggtcaaaaaggtgat |
26805468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 26795523 - 26795582
Alignment:
| Q |
79 |
cctcaacattgtgatccgtatccggtgaatttggccgtagtgaaaaaggtgatgaccatt |
138 |
Q |
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| T |
26795523 |
cctcaatattgtgctccgtatccggtggatcttgccgtggtgaaaaaggtgatgaccatt |
26795582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 26836101 - 26836175
Alignment:
| Q |
64 |
accaccataatatgccctcaacattgtgatccgtatccggtgaatttggccgtagtgaaaaaggtgatgaccatt |
138 |
Q |
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| T |
26836101 |
accaccataataggccctcaatattgtactccatatccggtggaactcgcggtggtgaaaaaggtgatgaccatt |
26836175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 26800321 - 26800373
Alignment:
| Q |
86 |
attgtgatccgtatccggtgaatttggccgtagtgaaaaaggtgatgaccatt |
138 |
Q |
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| T |
26800321 |
attgtgctccatatccggtggatttggctgtcgtgaaaaaggttatgaccatt |
26800373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 17941194 - 17941151
Alignment:
| Q |
171 |
aattaattgagaaaactatgttctaatcatgattatgaacatgt |
214 |
Q |
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| T |
17941194 |
aattatttgaaaaaactatgttctaatcatgatcatgaacatgt |
17941151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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