View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_2 (Length: 693)
Name: NF13235_low_2
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 247 - 679
Target Start/End: Complemental strand, 48485253 - 48484821
Alignment:
| Q |
247 |
gcaatgatgtattctttaatatgaatttctaggcactaaattgttgacatattttaatatctcgttagcgaaaactttattagccacatcatatcccgca |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48485253 |
gcaatgatgtattctttaatatgaatttctaggcactaaattgttgacatattttaatatctcgttagcgaaaactttattagccacatcatatcctgca |
48485154 |
T |
|
| Q |
347 |
ctctatcagatgcatgaatcagaactacagctcatgcatcttctagtcacttaccattgacccagatgaaattttgcatcaaagaacgactatttatttg |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48485153 |
ctctatcagatgcatgaatcagaactacagctcatgcatcttctagtcacttaccattgacccagatgaaattttgcatcaaagaacgactatttatttg |
48485054 |
T |
|
| Q |
447 |
atacctaataaattttcatagtcagagccttgacactcattcaacgaaggaggttgcttgcacttaaatcccaagactatagtatcttaatttcagtaga |
546 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48485053 |
atacctaataaattttcatagtcagagccttgacactcattcaacgaaggaggttgcttgctcttaaatcccaagactatagtatcttaatttcagtaga |
48484954 |
T |
|
| Q |
547 |
tacagagttgttagttatgccatgtgtaacaccgacactaaaaattgaaggcacctttttagttcaaacgactctgacacatgttgcatttaacatttct |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48484953 |
tacagagttgttagttatgccatgtgtaacaccgacactaaaaattgaaggcacctttttagttcaaacgactctgacacatgttgcatttaacatttct |
48484854 |
T |
|
| Q |
647 |
attttttaaaattgttttcggtgtctatgcgtc |
679 |
Q |
| |
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| T |
48484853 |
attttttaaaattgttttcggtgtctatgcgtc |
48484821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 48485516 - 48485290
Alignment:
| Q |
18 |
aaaatgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48485516 |
aaaatgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagata |
48485417 |
T |
|
| Q |
118 |
acttctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaaatatttcatgaaataga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48485416 |
acttctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaaatatttcatgaaataga |
48485317 |
T |
|
| Q |
218 |
aactgtgaaatgtaatttgaagattag |
244 |
Q |
| |
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| T |
48485316 |
aactgtgaaatgtaaattgaagattag |
48485290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 48477766 - 48477545
Alignment:
| Q |
22 |
tgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagataactt |
121 |
Q |
| |
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|||||||| ||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| | |||||| | |||| |
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| T |
48477766 |
tgaggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattatctcacaataaaacttgcaacaagttactt |
48477667 |
T |
|
| Q |
122 |
ctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaaatatttcatg-aaatagaaac |
220 |
Q |
| |
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||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| || || || ||||| ||||||||||||||| ||||| |||| |
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| T |
48477666 |
ctcaacagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaa--actcctgtttgtgaaatatttcatgcaaataaaaac |
48477569 |
T |
|
| Q |
221 |
tgtgaaatgtaatttgaagattag |
244 |
Q |
| |
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||||| ||| || ||||||||||| |
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| T |
48477568 |
tgtgatatgaaaattgaagattag |
48477545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 22 - 244
Target Start/End: Complemental strand, 48469442 - 48469221
Alignment:
| Q |
22 |
tgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagataactt |
121 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| |||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| | |||||| | |||| |
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| T |
48469442 |
tgaggatacatttatcagcacctgacgaaggtctcaatgaaaatggttctgatttgatagtatttgattatctcacaataaaacttgcaacaagttactt |
48469343 |
T |
|
| Q |
122 |
ctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaaatatttcatg-aaatagaaac |
220 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| || |||| || |||| ||||| |||||||| |||| |||| |
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| T |
48469342 |
ctcaaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtatcatttggaaattca--tgtttctgaaaaatttcatgcaaatgaaaac |
48469245 |
T |
|
| Q |
221 |
tgtgaaatgtaatttgaagattag |
244 |
Q |
| |
|
||||||||||| ||||||||||| |
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| T |
48469244 |
ggtgaaatgtaaattgaagattag |
48469221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 48884397 - 48884548
Alignment:
| Q |
22 |
tgaggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagataactt |
121 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||| |||| || | |||| |
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| T |
48884397 |
tgaggatacatttatcagcacctgaagaagatct----ggaaatggttctgatttgatagtatttgattatctcacaataaaagtagcaagaggttactt |
48884492 |
T |
|
| Q |
122 |
ctcaaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacat |
177 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
48884493 |
ctcaaaagaaaataaggccggagagggtggatttggtgcagtgtacaaggtaacat |
48884548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 8e-60; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 38817843 - 38818063
Alignment:
| Q |
25 |
ggatatatttatcagcagctgaagaagatctcaatggaaatggttctgatttaatagtatttaattatctcacaattaaagtggcaacagataacttctc |
124 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||||||| ||||||||||||||| ||||||||| ||||||||||||| ||| | |||||| | ||||||| |
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| T |
38817843 |
ggatacatttatcagcacctgacgaagatctcaatgaaaatggttctgatttgatagtatttgattatctcacaataaaacttgcaacaagttacttctc |
38817942 |
T |
|
| Q |
125 |
aaaagaaaataagcttggagagggtggatttggtgtagtgtacaaggtaacatatgaaaatacatctgttggtgaaatatttcatg--aaatagaaactg |
222 |
Q |
| |
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||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||| || |||| |||||||||||||| |||||||||||| |
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| T |
38817943 |
aaaagaaaataaggttggagagggtggatttggtgcagtgtacaaggtaacatttggaaattcacgtgtttctgaaatatttcatgctaaatagaaactg |
38818042 |
T |
|
| Q |
223 |
tgaaatgtaatttgaagatta |
243 |
Q |
| |
|
|||||||||| || ||||||| |
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|
| T |
38818043 |
tgaaatgtaaattcaagatta |
38818063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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