View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_3 (Length: 606)
Name: NF13235_low_3
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 59 - 593
Target Start/End: Original strand, 30745871 - 30746407
Alignment:
| Q |
59 |
agaaggttaattttcagcctagctttgtgaggtatggtccaaaaatgttggttttcacggtggtttgaagaaggacggtgtgggtgaagatggtcgatgg |
158 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30745871 |
agaaggttaattttaagcgtagctttgtgaggtatggtccaaaaatgttggttttcacggtggtttgaagaaggacggtgtgggtgaagatggtcgatgg |
30745970 |
T |
|
| Q |
159 |
taaatggtttcacaatagtgaatttgtgaaagattataaaataaatgacactgccattaaataaagggagatgttaactagtgtctacggtggaatcttt |
258 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || || ||||||| |
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| T |
30745971 |
taaatggttttacaatagtgaatttgtgaaagattatagaataaatgacacaaccattaaataaagggagatgttaactagtgtctgcgatgcaatcttt |
30746070 |
T |
|
| Q |
259 |
cagaacttttaaaatattaatttgaatttcttctctctctagatttgaaatgtcgtcaattggga--attagtggatgattttaggaaagagatgttatg |
356 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
30746071 |
cagaatttttaaaatattaatttgaatttcttctctctctagacttgaaatgtcgtcaattgggaatattagttgatgattttaggaaagagatgttatg |
30746170 |
T |
|
| Q |
357 |
aatcatggaatcgtaaggataaagatcgtaatgatcagaaagaagagaatgtgagagtactcatgatgaggatactcattgagattcatattaaacgaat |
456 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |
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| T |
30746171 |
aatcatggaatcataaagataaagatcgtaatgatcagaaagaagagaatgtgagagtactcatgatgaagatactcattgagacttatattaaacgaat |
30746270 |
T |
|
| Q |
457 |
ataaattaatataaaaacggtacaatagagagttatttataagagtaagtttgtctaactaaatcataaccaactaaccaatttggtaacctatcaagta |
556 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
30746271 |
ataaattaataaaaaaacggtacaatagagagttatatataagagtgagtttgtctaactaaatcataaccacctaaccaatttggtaacctatcaagta |
30746370 |
T |
|
| Q |
557 |
cttctagttgattcaaaccacttgggttagtctgatg |
593 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||| |
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|
| T |
30746371 |
cttctagttgattcaaaccacttggattagtccgatg |
30746407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 26415470 - 26415428
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctca |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
26415470 |
attaaagagggattttacgtttttcctctctaaaattccctca |
26415428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 400
Target Start/End: Original strand, 6687176 - 6687227
Alignment:
| Q |
349 |
atgttatgaatcatggaatcgtaaggataaagatcgtaatgatcagaaagaa |
400 |
Q |
| |
|
||||||||||||||| |||| || |||||||||| |||||||||||||||| |
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|
| T |
6687176 |
atgttatgaatcatgaaatcatacagataaagatcataatgatcagaaagaa |
6687227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 18217875 - 18217833
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctca |
59 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
18217875 |
attagagagggattttacgtttttcctcactaaatttccctca |
18217833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 27212874 - 27212916
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctca |
59 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
27212874 |
attaaagagggatttcacgtttttcctctctaaatttccctca |
27212916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 19269957 - 19269999
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctca |
59 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||| |
|
|
| T |
19269957 |
attaaagagggattttacgttttccctcactaaatttccctca |
19269999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 19545552 - 19545510
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctca |
59 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |||| |
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|
| T |
19545552 |
attagagagggattttacgtttttcctcactaaatttccctca |
19545510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29451136 - 29451095
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaatttctctc |
58 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
29451136 |
attagagagggattttacgttttccctcactaaatttctctc |
29451095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 553
Target Start/End: Original strand, 31135392 - 31135472
Alignment:
| Q |
475 |
ggtacaatagagag--ttatttataagagtaagtttgtctaactaaatcataaccaactaaccaatttggtaacctatcaa |
553 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||| || ||||||| || ||| | |||||||||||||||||||||||| |
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|
| T |
31135392 |
ggtacaatagagagacttatttataggagtgagtcggtgtaactaactcccaactacctaaccaatttggtaacctatcaa |
31135472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 9177146 - 9177110
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaattt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
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|
| T |
9177146 |
attaaagagggattttacgtttttcctcactaaattt |
9177110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 5473893 - 5473857
Alignment:
| Q |
17 |
attaaagagggattttacgtttttcctctctaaattt |
53 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5473893 |
attaaagagggattttacgttttccctcactaaattt |
5473857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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