View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13235_low_4 (Length: 588)
Name: NF13235_low_4
Description: NF13235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13235_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 112 - 566
Target Start/End: Original strand, 26206281 - 26206741
Alignment:
| Q |
112 |
ctgcacttccatgatttagacatgtatttcttttcacttaaattttactactcatttttgcttcacctaatattattgtctaacttatatctaatctaac |
211 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26206281 |
ctgcactttcatgatttagacgtgtatttcttttcacttaaattttactactcatttttgcttcacctcatattattgtctaacttatatctaatctaac |
26206380 |
T |
|
| Q |
212 |
gatacttaaacaagtcatctgcaaccccgtgcatcccgcgggtctcattctagnnnnnnn---attaattaaagtgccaataattaatggccattttaca |
308 |
Q |
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| T |
26206381 |
gatacttaaacaagtcatctgcaaccccgtgcatcccgcgggtctcattctagttttttttttattaattaaagtgccaataata----gccattttaca |
26206476 |
T |
|
| Q |
309 |
accgtatccaatggaattggagctttttac--------cttgtgacttagctggcacctaaagcgtcctctagccgtccttggaattgtctccacttctt |
400 |
Q |
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| T |
26206477 |
accgtttccaatggaattggaggttataaggctatgctcttatgacttagctggcccctcaagcgtcttctagccgtccttggaattgtctccacttctt |
26206576 |
T |
|
| Q |
401 |
gttcttttcttttttgtgttgatatattagaacaataagattagtttattaaagtttgagtagcatattctatgttgaaatacaaaaattaaaacatatg |
500 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | ||||||||| |
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| T |
26206577 |
gttcttttcttttttgtgttgatatatgagaacaataagattagtttattaaggtttgagtagcatattctatgttgaaatactaaaact-aaacatatg |
26206675 |
T |
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| Q |
501 |
tctatgtctttgacaatatcaattttggttaaagttatcataaattgcataataaattttgaaata |
566 |
Q |
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| T |
26206676 |
tctatgtctttgacaatatcaattttggttaaagttatcataaattgcataataaattttgaaata |
26206741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 112 - 509
Target Start/End: Original strand, 26225903 - 26226314
Alignment:
| Q |
112 |
ctgcacttccatgatttagacatgtatttcttttcacttaaattttactactcatttttgcttcacctaatattattgtctaacttatatctaatctaac |
211 |
Q |
| |
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|||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26225903 |
ctgctctttcatgatttagacatgtgtttcttttcactgaaattttactactcatttttgcttcacctaatattattgtctaacttatatctaatctaac |
26226002 |
T |
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| Q |
212 |
gatacttaaacaagtcatctgcaaccccgtgcatcccgcgggtctcattctagnnnnnnn-----------attaattaaagtgccaataattaatggcc |
300 |
Q |
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| T |
26226003 |
gatacttaaacaagtcatctgcaaccccgtgcctcccgcgggtctcattctagttttttttttttttttttattaattaaagtgccaataat--at--cc |
26226098 |
T |
|
| Q |
301 |
attttacaaccgtatccaatggaattggagctttttac--------cttgtgacttagctggcacctaaagcgtcctctagccgtccttggaattgtctc |
392 |
Q |
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| T |
26226099 |
attttacaaccgtttccactggaattggaggttataaggctatgctcttatgacttagctggcccctcaagcgtcttctagccgtccttggaattgtctc |
26226198 |
T |
|
| Q |
393 |
cacttcttgttcttttcttttttgtgttgatatattagaacaataagattagtttattaaagtttgagtagcatattctatgttgaaatacaaaaattaa |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | | |
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| T |
26226199 |
cacttcttgttcttttcttttttgtgttgatatattagaacaataagattagtttattaaggtttgagtagcatattctatgttgaaatactaaaact-a |
26226297 |
T |
|
| Q |
493 |
aacatatgtctatgtct |
509 |
Q |
| |
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||||||||||||||||| |
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| T |
26226298 |
aacatatgtctatgtct |
26226314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 26225814 - 26225854
Alignment:
| Q |
23 |
aaccaagtaaaaaatgttaaagacgtagataacttgactgg |
63 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||| |
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| T |
26225814 |
aaccaagtaaaaaatgttaaagacatagatcacttgactgg |
26225854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 26206185 - 26206232
Alignment:
| Q |
14 |
caaaggccaaaccaagtaaaaaatgttaaagacgtagataacttgactgg |
63 |
Q |
| |
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|||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
26206185 |
caaaggccaaaccaagtaaaaaatgt--cagacatagataacttgactgg |
26206232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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